Pelagibacterium flavum: OF122_09445
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Entry
OF122_09445 CDS
T08676
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OF122_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pem03021
]
OF122_09445
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_09445
Enzymes [BR:
pem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OF122_09445
Transcription machinery [BR:
pem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OF122_09445
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OF122_09445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Phage_tube_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
UYQ74091
UniProt:
A0ABY6ITY5
LinkDB
All DBs
Position
1885243..1886304
Genome browser
AA seq
353 aa
AA seq
DB search
MAAGQGRDFERKLDVMIQKNWQELIKPTKLDVVPGSDSARVASVVAEPLERGYGLTLGNT
LRRVLLSSLQGAAITAIQIDGVLHEFSSIPGVREDVTDLVLNIKEIAIKMEDEGPKRLTL
SKQGPGAVTAGDIKTTGDIEVLNPDLVICHLDDGAEINIEFTVNTGKGYVPADRNKPEDA
PIGYIAVDALFSPVKRVSYKVEKTREGQNLDFDKLSMQIETNGAISPEDALAFAARIVQD
QLSVFVNFEEPTKEKAEDSTPELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQK
TEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMDVNNWPPENIEDLAKRYEDHY
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgggcagggccgcgattttgaaaggaagttggacgtgatgatccagaaaaac
tggcaggaactgattaagccgaccaagctcgacgtcgttccgggcagcgattccgcgcgc
gtcgcctccgtggtcgccgagccgctcgaacgcggttatggcttgacccttggcaacacg
ctgcgccgggttctgctctcgtcgctgcagggtgcggcaattaccgccatccagatcgat
ggcgtattgcacgaattctcgtcgattcccggcgtgcgtgaggacgtgactgatctcgtt
ctcaacatcaaggaaatcgccatcaagatggaagacgaagggccaaagcgccttacgctt
tccaagcagggtccgggtgccgtcaccgccggcgacatcaagaccactggcgacatcgaa
gtgctcaatcctgacctcgttatctgtcaccttgatgacggggccgagatcaatatcgag
ttcacggtcaataccggcaagggctatgtcccggccgaccgcaacaagcctgaagatgca
ccgatcggctatatcgctgtcgacgcattgttctcgccggtcaagcgcgtcagctacaag
gtcgaaaagacccgtgagggccagaacctcgactttgacaagctgagcatgcagatcgag
accaacggcgcgatcagccccgaagacgcgctggcctttgcggcccgcatcgtccaggac
cagctgtccgtgttcgtcaatttcgaagagcccaccaaggaaaaggccgaggattcgaca
cccgaactcgccttcaacccggcgctgctcaagaaggtggacgagctcgagttgtcggtg
cgttcggcgaactgcctcaagaacgacaacatcgtttatattggcgatctcatccagaag
acggaagcggaaatgctccgcacgccgaacttcgggcgcaagtcgctcaacgagatcaag
gaagtgctggcccagatggggctccatctcgggatggacgtcaacaactggccgcccgaa
aacatcgaagacctcgccaagcgttacgaagatcattattga
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