Pelagibacterium flavum: OF122_09505
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Entry
OF122_09505 CDS
T08676
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pem03009
]
OF122_09505 (rimO)
Enzymes [BR:
pem01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
OF122_09505 (rimO)
Ribosome biogenesis [BR:
pem03009
]
Prokaryotic type
ribosomal protein modification factors
OF122_09505 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
TGT_C2
Motif
Other DBs
NCBI-ProteinID:
UYQ73974
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Position
complement(1896079..1897431)
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AA seq
450 aa
AA seq
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MSAPTSTQNAPKIGLVSLGCPKALVDSERILTTLRAQGYSFSPSYEGADVVIVNTCGFLD
SAKAESLDAIGEAISENGRVIVTGCLGGEEELIRKTHPGVLAVSGAHQYEAVVDAVHQAV
PPVPNAFVDLVPEQGLRLTPRHYAYLKISEGCNNRCTFCIIPSIRGDLVSRPIASVLYEA
ERLVKAGVKEIMVISQDTSAYGVDIKYATSPYRGRQVEARFQTLAEEMGKLGAWVRMHYV
YPYPHVDNVIPLMADGVILPYLDIPFQHASPQVLKSMRRPANQEKTADRIRKWRETCPDL
AIRSTFIVGFPGETEEDFQMLLDWVHETKIDRAGAFPYEPVTGARANDLGLDEIPDELKQ
ERYGRLMEALQEVSTERLASRVGRTIDVLVDDVEPEEQRVIARSQWDAPEIDGNVIVENA
TGIKPGDMISVTVVDSDEYDLYAVPAGSVQ
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgccaacatcaacgcagaacgcccccaagatcggcctcgtcagccttggctgc
cccaaggccctcgtcgattccgaacgcattctcaccacgctgcgcgcgcagggctacagc
ttttcgccctcttatgagggcgccgatgtcgtcatcgtcaacacctgcggctttctcgac
agcgccaaggccgaaagcctcgacgccattggcgaggcaatttcggaaaatggccgcgtc
atcgtcaccggttgcctcggcggcgaagaagagctgatccgcaagacccatcccggcgtt
ctggccgtttcgggcgcgcaccagtatgaggccgtcgtcgatgccgtgcatcaggccgtg
cccccggtgcccaacgcctttgtcgatctcgtccccgaacaggggttgcgtctgaccccg
cgtcactacgcctatctcaagatttccgaaggctgcaacaatcgctgcaccttctgtatc
atcccctcgatccgcggcgatctcgtctcgcgccccatcgcttcggtgctttacgaggcc
gagcggctcgtcaaggccggcgtcaaggagatcatggttatctcccaggacacctccgcc
tatggcgtggacatcaaatacgctacgtccccctatcgcgggcgtcaggtcgaagcgcgc
ttccagacattggccgaggagatgggcaagctcggcgcttgggtgcgcatgcactacgtc
tatccctacccccacgtcgacaacgtcattcctctgatggccgacggggtgatcctgccc
tatctcgatatccccttccagcacgccagcccgcaggttctcaaatccatgcggcgcccg
gccaatcaggaaaagaccgccgaccgcatccgcaaatggcgcgaaacctgtcccgatctc
gccatccgctcgaccttcatcgtcggcttccccggtgagaccgaggaagacttccagatg
ctgctcgattgggtccacgagacaaagatcgaccgcgccggggcgttcccctacgagccg
gtcactggcgcccgcgccaacgatctgggccttgatgaaatccccgatgagctcaagcag
gaacgctacggccgcctcatggaggctttgcaggaagtttcgaccgaacgcctcgcctcc
cgtgtcggccgcaccatcgacgttctggtcgatgatgtcgaacccgaagagcagcgcgtc
atcgcccgctcgcaatgggatgcccccgagatcgacggcaatgtgatcgtcgagaacgct
accggcatcaagcccggcgacatgatctcggtgaccgtggtcgattccgacgaatacgac
ctctatgcggtcccggccggttcggtgcagtga
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