Pelagibacterium flavum: OF122_09675
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Entry
OF122_09675 CDS
T08676
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pem03032
]
OF122_09675 (topA)
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_09675 (topA)
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OF122_09675 (topA)
DNA replication proteins [BR:
pem03032
]
Prokaryotic type
DNA Topoisomerases
OF122_09675 (topA)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OF122_09675 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UYQ74005
LinkDB
All DBs
Position
complement(1926508..1929102)
Genome browser
AA seq
864 aa
AA seq
DB search
MKVVIVESPAKAKTINKYLGKDFEVLASFGHVRDLPAKDGSVRPDDDFAMSWEVDSNSKK
RLADITRALKGADELILATDPDREGEAISWHLLDALKAKKAIKADMPVKRVVFNAITKDA
VTNAMQHPRDIDAPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVTE
REEEIERFKPQEYWSVIPTLNQSGKSFATRLHSVDGDKTDKLAIKTGEDAQGLKTAIEKG
NFKVASVDKKPTKRNPYAPFTTSTLQQDASSRLSLSPSRTMQIAQRLYEDGLITYMRTDA
VQMAPEAIEAARRVIGKEFGTEYVPEKPRLYQTKAKNAQEAHEAIRPTDLGKHPDTLRNL
DPDQHKIYQLIWRRALASQMRSAEIERTTADIDVVAAGRAITLRATGSVVTFPGFLGVYG
VEKTDEDDEDGKDLPALNVGDTPALEKVEIDQHFTQPPARYTEASLIKKMEELGIGRPST
YAATLGTLRDRDYIRIDKRAIVPEDRGRLVTAFLQSFFTKYVEYGFTAGLEEELDEISAG
RIDYKEVLRRFWKDFSHQADEIKDLRVSEVLDALNDLLGHHIFPERPDGTDPRLCPTCGT
GQLSLKLGKYGAFIGCSNYPECRHTQQLAESATGQASEAAQGDGVLGTDPETGSEIYLKT
GRFGPYVQLGEDAKDAKRSSIPKGWDAGAMDLEKALKLLSLPREVGLHPEDGKPITAGIG
RYGPFVLHEKTYANLPDVEEVFTVGLNRAVDLIAQKRAGGGRGGRGAAVAAIQTFEHDDG
PITVRAGRYGPYVNQGKVNATLPKDLAPEAVTLEKALELIVAKGGSKSKAKAKPKAAAKK
PAAKKPATKKTTTKKPAAKKKAEV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcgtcatcgtcgaaagcccggccaaggcaaagaccatcaacaaatatctgggc
aaggacttcgaggttctggccagctttggccatgtgcgcgacctgcccgccaaggacgga
tcggtgcggcccgacgacgatttcgccatgagctgggaggtcgattccaactccaaaaag
cggctggccgacatcacccgcgccctcaagggggccgacgagctgattctggcaactgac
ccggatcgcgaaggcgaggccatttcctggcacctgctcgatgccctcaaggccaaaaag
gccatcaaggccgacatgccggtcaagcgcgtggtgttcaacgccatcaccaaggacgcc
gtgaccaacgccatgcagcatccgcgcgatatcgatgcgccgctggtcgacgcctatctg
gcgcgccgggcactcgattatctggtgggattcacgctctcgccgatcctgtggcgcaag
ctcccgggctcgcgctcggcgggccgggtgcaatcggtcgccctgcgactggtcaccgag
cgcgaggaagagatcgagcgcttcaagccccaggaatactggagcgtcatcccgaccctc
aaccagtccggcaagagctttgcgacacggcttcattcggtcgatggcgacaagaccgac
aagctggccatcaagaccggcgaagacgcccaaggtctgaaaacggcaatcgagaagggc
aatttcaaggtcgccagcgtcgacaagaagcccaccaagcgcaatccgtacgcgcccttc
accacctccaccctgcagcaggacgcctcttcgcggctttcgctttcgccctcgcgcacc
atgcagatcgcccagcgcctctatgaggatgggttgatcacctatatgcggaccgacgcc
gtgcagatggcgcccgaggctatcgaagcggcccgccgggtgatcggcaaggaattcggc
accgaatacgtgcccgaaaagccgcgcctctaccagaccaaggccaagaacgcccaggaa
gcgcacgaggcgatccgccccaccgatctgggcaagcaccccgatacgcttcgcaatctc
gaccccgaccagcacaagatctaccagctgatctggcgccgcgcgctggccagccagatg
cgatcggccgaaatcgaacgcaccacagccgacatcgacgtcgttgcggcgggccgtgcc
atcaccctgcgcgccaccggatcggtcgtgaccttcccgggctttctcggcgtctatggc
gttgaaaagaccgacgaggacgatgaagacggcaaggacctgcccgcgctcaatgtcggc
gacaccccggcactcgaaaaagtcgagatcgatcagcatttcacccagccccctgcccgc
tataccgaagcgagcctcatcaagaagatggaagagctgggcatcggtcgcccgtccacc
tatgcagcgacgctgggaacgctcagggaccgcgattacatccgcatcgacaagcgcgcc
atcgtccccgaggatcgcggccgcctggtcaccgcattcctgcaaagctttttcaccaag
tatgtcgaatacggcttcaccgccgggctcgaggaagaactcgacgagatctcggccggc
cgaatcgactacaaggaagtgctgcgccgcttctggaaggacttttcccatcaggccgac
gagatcaaggatttgcgggtttccgaagtcctcgatgcgctcaatgaccttttgggccat
cacatcttccccgaaaggcccgacggaaccgacccccgcctctgccccacctgcggcact
ggccagctttcgctgaaactgggcaagtatggcgcctttatcggctgctcgaattacccc
gaatgccgccatacccagcaattggccgaaagcgccaccgggcaggcgtccgaagcggcg
cagggcgatggcgttctgggtacagacccggaaaccggctcggaaatctatctcaagacc
ggccggttcggcccctatgtccagcttggcgaagacgccaaggatgccaagcgctcctcc
attcccaaaggttgggacgcgggcgccatggatctggaaaaggcactgaagctgctctcc
ctgccgcgcgaagtcggcttgcaccccgaagatggcaagccgatcactgccgggatcggc
cgttacggccccttcgtgttgcacgagaagacttacgccaatcttcctgatgtggaggag
gttttcacggtcgggctcaaccgcgccgtcgatctgatcgcccagaagcgggctggcggc
gggcgcggaggacgtggcgctgccgtggcggcaatccagaccttcgagcatgacgatggt
ccgattaccgtgcgcgcgggccgctatggtccttacgtcaaccagggcaaggtcaacgcc
accctgcccaaggatctggcccccgaggccgtgacgcttgaaaaggcgctggaactgatc
gtcgccaagggcggttcgaagagtaaggcgaaagccaagcccaaagcggcagcaaagaag
cccgccgcgaaaaagccggcgacaaagaagacgacaaccaaaaagcccgcagccaagaag
aaggctgaggtctaa
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