Pelagibacterium flavum: OF122_13445
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Entry
OF122_13445 CDS
T08676
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_13445 (radA)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OF122_13445 (radA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
ATPase
Zn_ribbon_LapB
ChlI
AAA_16
AAA
DnaB_C
RecA
AAA_30
SLFN-g3_helicase
AAA_22
Lon_C
AAA_24
nSTAND3
NTPase_1
AAA_14
ATPase_2
MeaB
GvpD_P-loop
SRP54
CbiA
KdpD
ArsA_ATPase
DAP3
Fer4_NifH
NACHT
IstB_IS21
DEAD
Zeta_toxin
MCM
AAA_31
AAA_5
NPHP3_N
DUF7129
PAXNEB
Motif
Other DBs
NCBI-ProteinID:
UYQ71060
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All DBs
Position
2652056..2653450
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AA seq
464 aa
AA seq
DB search
MAKLKSSYVCQSCGAVTPRWAGRCEACGEWNSIVEEVATSGVGAGPKAAVASGRPVELVP
LSGDSEDAIRIESKNGELDRVLGGGFVMGSAILVGGDPGIGKSTLLLQAAASLARQGKRV
IYISGEEAIAQVRLRAARLGVADAPVELASETHVETILATIEKGKAPDLVIIDSIQTCWT
ERVESAPGTVTQVRTSAQALTRFAKKSGSAVVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
GDTSLTYRILRGVKNRYGATDEIGVFEMVGSGLREVPNPSALFLDQRDSGAAGSAVFAGV
EGTRPVLVEIQALVAPSPLGTPRRAVVGWDSARLSMVLAVLETRCGVRIGANDIYLNVAG
GLKVNEPAADLAVAAALISSLTNSPLPADAVYFGEVSLSGGIRPVVHANLRVREAAKLGF
GSVHTARLNAKERTDGVALNEFSALAELVGRIAAAGERNVAEAD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttggccaagctcaaatccagttatgtctgccaatcctgtggcgcagtcaccccgcgctgg
gcggggcggtgcgaggcgtgcggagagtggaactcgattgtcgaggaagtcgcgacgtcg
ggggtcggtgccgggcccaaggcagcggtcgcttcgggacgtccggtggaactggtgccg
ctttcgggcgacagcgaagacgccatccgcatcgagagcaagaatggcgagctcgatcgc
gtgcttggcggcgggttcgtcatgggatcggccatcctcgtagggggcgacccgggaatc
ggtaaatcgacgctgcttttgcaggcggcggcttcgctggcgcggcagggcaagcgggtc
atctatatttcaggggaagaggcgattgcccaggtccggctgcgcgccgcacggctgggc
gtggccgacgcgccagtggaactggccagcgaaacccatgtcgagactatcctcgccacc
atcgagaagggcaaggcgccagatctggtgatcatcgattctatccagacctgctggacc
gagcgggtggaaagcgcgcccggaactgtaacacaggtgcgcaccagtgcgcaggcgctg
acccggttcgccaagaagtcgggctcggcggtggtgctggtggggcatgtcaccaaggac
ggacagatcgccggaccgcgggtggtcgagcatatggtcgatgccgtgctctatttcgaa
ggcgacacctcgctgacctaccgtatcctgcgcggggtcaagaaccgctatggcgcgacc
gacgagatcggggtgttcgagatggtgggctcggggttgcgcgaagtgcccaacccttcg
gcgctgtttctcgatcaacgcgattccggggcggcaggctcggcagtgttcgccggggtc
gagggcacgcggcccgtgctggtggaaatccaggcgctggttgccccttccccgctcggc
acgccccgccgggccgttgtgggctgggattccgcgcgtctctcgatggttctggcggtt
ctcgaaacgcggtgcggggtgcggatcggggccaacgacatctatctcaatgtggcgggc
gggctcaaagtcaacgaaccggcggccgatcttgccgtggcggcggcgctgatctcatcg
ctcaccaattcccccctgcccgccgatgccgtctatttcggcgaagtcagcctttctggt
ggcatccggcctgtggtgcacgccaatctgcgggtgcgcgaagcggcaaaactgggattc
gggtctgtgcatacggccaggctcaacgccaaggagcgaactgacggggtggcgctcaac
gagttttcggcgctggccgagttggttggccggatcgcggcggctggcgagcggaacgtg
gccgaggccgactga
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