Pelagibacterium flavum: OF122_15330
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Entry
OF122_15330 CDS
T08676
Name
(GenBank) DUF853 domain-containing protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_15330
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
OF122_15330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HerA_C
AAA_22
DUF87
ResIII
AAA_30
AAA_16
TraG-D_C
FtsK_SpoIIIE
AAA_10
Hydrolase
nSTAND3
TrwB_AAD_bind
T2SSE
AAA_18
AAA_19
AAA_7
AAA_28
Motif
Other DBs
NCBI-ProteinID:
UYQ71409
LinkDB
All DBs
Position
complement(3047240..3048724)
Genome browser
AA seq
494 aa
AA seq
DB search
MLVDDAVYLGTSTRPEYLHLGFGNRHGLITGATGTGKTVTLQILAEGFSRAGVPVFCADI
KGDVAGLSKPGEPKDFLAARAEKIGFSDYAFEGFPTIFWDLFGRQGHPVRTTVSEMGPLL
LSRMLDLNATQEGILNATFKLADDEGLLLLDFKDLRSLLSHVAERRAELSAHYGNISTAS
VGAIQRALLVLEQQGAENFFGEPALKISDLMRTDTQGRGFISILAADELMRSPRLYAMFL
LWLLSELFEQLPEVGNPDKPKLVFFFDEAHLLFDEAPKVLLDKIEQVVKLVRSKGVGVYF
VTQNPADVPEGVLAQLGNRIQHALRAYTPKEQKAVRIAAETFRPNPDFDTAEVITQLGTG
EALVSVLEEKGIPSIVGRTLIRPPSSRMAPITTDERATVIAGSPVSGLYDTSLDRESAYE
LLDARAAQALREAEIAAREAELEKIEQARTKQTARRSTRQTPMEAALTSFARTVARRAGD
SFVRSVLGTLTRGR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtcgacgacgccgtttacctcggaaccagcacccggcccgaatacctccacctc
ggtttcggcaatcgccacggccttatcaccggcgccaccggtacggggaaaaccgttacc
ctccagatacttgccgaaggcttctcccgcgccggcgtccccgtcttctgcgccgacatc
aagggcgatgtcgcagggctctcaaagcccggcgaacccaaggatttcctggctgcccgc
gctgaaaagatcggcttttccgactacgccttcgaaggctttcccaccatcttctgggac
ctcttcggtcgtcagggccatccggtccgcaccactgtttccgagatgggcccgctgctg
ctctcgcgcatgcttgacctcaacgccacccaggaaggcatcctcaacgccaccttcaaa
ctggccgatgacgaggggcttttgcttctcgatttcaaggatttgcgctcgctcctcagt
cacgtcgccgagcgccgtgccgagctttccgcccattacggcaacatctccacggcctcg
gtcggtgccatccagcgcgcgctgctcgtcctcgaacagcagggcgccgagaacttcttt
ggcgagccggcgctcaagatttccgacctcatgcgcaccgatacgcaagggcgcggcttc
atctcgatccttgccgccgacgaactcatgcgctcgccccggctctacgcgatgttcctg
ctctggctgttgtctgaacttttcgagcaactgcccgaggtgggcaatcctgacaagccc
aaactggtgttcttcttcgacgaggcccatctgctgttcgacgaggcgccaaaggttctg
ctcgacaagatcgagcaggtcgtaaaactcgtgcgctcgaaaggcgtaggcgtctatttt
gtaacgcaaaatcccgccgatgtgcccgaaggcgtcctcgcccaattgggcaatcgcatc
cagcacgccctgcgcgcctacacgcccaaggagcaaaaggccgtccggatcgcagccgag
accttccggcccaatcccgattttgacaccgccgaagtcatcacccaactgggaaccggc
gaggcgctggtttctgttctcgaagaaaagggcattccctcgatcgtcggtcgcaccctg
atccgtccgccatcctcgcgcatggcgccgatcaccaccgacgagcgcgccaccgtcatc
gccggaagcccggtttccgggctctacgataccagccttgatcgcgagtcggcctatgaa
ctgctcgacgcccgcgccgcgcaagcgctgcgcgaggccgagatcgccgcccgcgaggcg
gaattggaaaagatcgagcaggctcggaccaaacagacggcccgccgttcgacccggcaa
acgccgatggaagcagcactgaccagctttgcccgcacagtcgcccgccgcgccggggat
tcctttgtgcgcagcgtgctcggcacgctcaccagggggcgctag
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