Pelagibacterium flavum: OF122_16035
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Entry
OF122_16035 CDS
T08676
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pem03009
]
OF122_16035
Enzymes [BR:
pem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
OF122_16035
Ribosome biogenesis [BR:
pem03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OF122_16035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
SYY_C-terminal
Motif
Other DBs
NCBI-ProteinID:
UYQ71542
LinkDB
All DBs
Position
complement(3180096..3181688)
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AA seq
530 aa
AA seq
DB search
MSDKAPPPSGERLAKVIARAGVCSRRDAEAWITAGRIAVNGSPVKTPAFNVVESDTIAVD
GKPLARKQATQLWLYHKPAGLMVTEKDPEGRATVFSEFEKLGLPRVLTVGRLDYNTEGLL
LLTNDGGLKRTLELPATGWVRRYRVRAFGSVTQEQLDTLANGTTVEGVDYGPIEATLDST
SGSNVWISMSLREGKNREVRNVLGALGLEVNRLIRLSYGPFQLGDLPTGSVEKVKTRILQ
DQLGKRLAESAGADFDSPIAEEPNQPRRRSPQRESQPTERDRFGGLRKRPDFKRPERREE
APRTVHFDDGRPSQSFVPSGGDRKGKRDEGGFGDRPRRDAAGGKSFDRGGKSFGDRPQKP
GGKPFGKGPRDAGGGDRSFRKDADRPPRRESAGGDRPFNKGPRRDGGGDRPFSSGPRREG
AGADRPFSKGPRRDGAGGDRPFAKGPRREGTGADRPYSKGPRREGAGSDRPFSKGPGGQT
RPGGKPFGKGPRRETGADRPTGQRPPRRDGKPSTGTRPDRPRRPRPDEDK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataaagccccacccccatccggcgagcgcctcgccaaggtcatcgcccgcgca
ggagtctgttcgcgccgcgatgccgaagcctggatcaccgccggccgcatcgcggtcaac
ggcagcccggtcaagacccccgcattcaatgtcgttgaaagcgatactatcgccgtcgat
ggcaagcccctggcccgcaagcaggccacccagctttggctgtatcacaagcccgcgggc
ctcatggtcaccgaaaaggaccccgaggggcgcgcaaccgtcttttcggaatttgaaaag
ctcggtttgccgcgcgtgctgactgtgggacggctcgactacaataccgagggccttttg
ctgctcaccaatgatggtggcctcaagcgcaccctcgagctgcctgcaaccggctgggtg
cggcgttaccgtgtccgtgccttcggctcggtgacccaggaacagctcgatacgcttgcc
aacggcacgaccgttgaaggggttgattacggtcccatcgaagcgacgctcgacagcacc
agtggttccaatgtttggatcagcatgagcttgcgcgagggcaagaaccgcgaggttcgc
aacgtccttggcgcgctcggcctcgaagtcaaccggctgatccgtctctcctatggcccg
ttccagcttggtgatctgccgacggggtcggtcgaaaaggtgaagacgcgcattctccag
gaccaactgggcaagcgcctggccgaaagtgcaggggcagatttcgattctcccatcgct
gaggaacctaatcagccgcgccgccgctcccctcagcgcgaaagccaacctactgagcgc
gatcgttttggtggtctgcgcaaacggcccgatttcaagcgtcccgagcggcgcgaagaa
gcccctcgcacggttcacttcgacgatggccgcccctcccagagctttgtgccgtctggt
ggtgaccggaagggtaagcgcgatgaaggtggcttcggtgaccggccgcgccgcgacgcc
gcaggcggaaaaagctttgaccggggaggtaagtcgttcggcgatcgtccccaaaagccc
ggcggcaagccgtttggcaaggggccgcgcgatgccggcggtggtgatcgctcgtttcgc
aaggatgcggatcgccctccgcgccgggaatctgccggaggagaccgcccctttaacaaa
ggcccccgcagggacggtggaggagaccgacccttctcaagtggtccgcgccgcgaaggc
gctggtgccgatcgtccattctccaaagggcctcgtagagatggtgccggcggcgatcgt
cccttcgcaaaagggccgcgtcgggagggcaccggcgcagaccggccctattccaaagga
ccacggcgcgagggcgcaggttctgatcgcccgttctcgaaaggccctggcggccagacc
cgccccggtggcaagccctttggcaaggggccacgccgggaaaccggggctgacaggccg
accggccagcgcccgccgcgtagggatggaaagccatcgaccggcactcggcccgatcgc
ccccgccgcccgcgtccggacgaggataaatag
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