KEGG   Pelagibacterium flavum: OF122_16490
Entry
OF122_16490       CDS       T08676                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pem  Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:pem00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pem03400]
    OF122_16490
Enzymes [BR:pem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     OF122_16490
    5.6.2.6  RNA 3'-5' helicase
     OF122_16490
DNA repair and recombination proteins [BR:pem03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    OF122_16490
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C Cas3-like_C_2 PSD4 ResIII
Other DBs
NCBI-ProteinID: UYQ71621
UniProt: A0ABY6IM98
LinkDB
Position
complement(3271468..3273969)
AA seq 833 aa
MTALSPIVADWFAAKGWQARPHQLAVLEAERAGNSVLLIAPTGAGKTLAGFLPSIEDLIG
SPMEGLHTLYISPLKALAVDVARNLGDPVREMGLKIKVETRTGDTPASRRQRQRFDPPHI
LMTTPEQLALLLSHPDSVRLFGSLRRVVLDELHALVTSKRGDLLSLGVARLARLSPDVKV
TALSATVAQPEILRDWIAAPVAPNPAVLLNAPGGAAPQLSILASEERLPWAGHSAAYAVP
DLYATIKQHGTTLLFVNTRSQAEMLFQNLWAINDEALPIALHHGSLSVEQRRKVESAMVS
GVLRAVVCTSTLDLGIDWGDVDLVVQVGAPKGASRMLQRIGRANHRLDEPSKAMFVPANR
FEVLECEAALEAVAEGAQDSETPLSGGLDVLAQHILGRACADPLDEDETFAEIISAWPYK
DLTREKFHRVLDFVSTGGYALRAYERFAKLRKTADGLWRIANPQIAQQYRLNVGTIVEEP
MLKVRLVRARGVRKGATTGPIGRGGRMLGEIEEYFIDQLVRGDTFMFGGEIVAFEGVVET
EAYVSRSFSDNPKIPSYMGGKFPLSTFLADKVRKILADPEGWRVLPDQVREWLDLQNYAS
VLPDSDSLLVETFPRADKHYMVCYPFEGRLAHQTLGMLLTRRLERARAQPLGFVASDYAL
AIWCAADLGALIASDRLSLDQLFDEDMLGDDLEAWLDESALMKRTFRNCAIISGLIERRH
PGKEKSGRQITVSSDIIYDVLYQHEPDHILIEATRRDAARGLLDIERLGLALRRIRRHIR
HKRLDRISPLAVPVLLDIGKEPIFGEAREAVLREAAEDLIAEAIGTDIPTNQG
NT seq 2502 nt   +upstreamnt  +downstreamnt
gtgaccgcactttcacccattgttgccgactggtttgccgccaagggctggcaggcacgc
ccgcaccaattggcagtgctcgaagccgaacgagccggcaattcggtgttgctaatcgct
ccgacgggggcgggcaagacgctggctgggttcctgccctccattgaggatttgatcggc
agccccatggaagggctgcacacgctctacatttcaccgctcaaggcgctggccgtcgat
gtggcgcgcaatctgggcgatccggtgcgcgaaatgggattgaagatcaaggtcgaaacc
cggaccggagacacgcccgcctcgcgccgtcagcgccagcgcttcgatccaccacacatc
ctgatgacgacgcccgaacaactggcgctgctcttaagccatcccgacagcgtcaggctg
ttcggaagcctgcggcgtgtcgtgctcgatgaattgcacgcgctcgtcacctccaaacgc
ggcgacctgctcagccttggtgtcgcgcgactggccagattgtcgcccgatgtgaaggtc
accgcgctttcggcgactgtcgcccagcccgaaatcctgcgagattggatcgctgcgcct
gtcgcgccaaatccggcggtgctgcttaatgcgcccggcggcgcagcgccgcagctttcg
atcctcgccagcgaggagagactgccctgggcgggccattccgccgcctatgcggtgccc
gacctttacgcaacgatcaaacagcacggcacgacactgctgttcgtcaacacgcgatcg
caggccgagatgctgttccagaacctctgggcaatcaacgacgaggcgctgccgattgcg
ctccatcacggttcgctctcggtcgaacagcgccgcaaggtcgaaagtgccatggtgtct
ggcgtgctgcgcgccgtcgtctgtacctcaacgctcgatctgggcatcgactggggcgac
gtcgatctggtcgtgcaggtcggcgcgccaaagggggcgtcacgcatgctccagaggatc
gggcgcgccaaccaccggctcgacgaaccgtccaaagccatgttcgttcccgccaaccgg
ttcgaagtgctcgaatgcgaggcggcgctggaggccgtggccgagggtgcgcaggacagc
gaaacacctctgtccggcggtctggacgtgctcgcccagcacattctggggcgagcctgc
gccgacccccttgatgaggatgaaacttttgccgaaatcatctcggcctggccctacaag
gacctgacgcgagaaaaatttcaccgggttctcgatttcgtttcgaccggtggatacgcg
ctacgggcctatgaacggtttgcaaagctgcgcaagaccgccgacgggctctggcggatt
gccaatccacagatcgcccaacagtaccggcttaatgtcggcaccattgtcgaggagcca
atgctcaaggtgcggctggtgcgggcccgcggtgtgcgcaagggcgcaacgacagggccg
atcgggcgcgggggcaggatgttgggagagatcgaggagtatttcatcgatcaactcgtg
cgcggtgacaccttcatgttcggcggcgagatcgttgccttcgagggggtcgtggaaacc
gaggcctatgtgtcgcgctcgttttccgacaatccgaaaattccctcttatatgggcgga
aaatttccgctctcgacctttctggccgacaaggtgcgcaagatcctcgccgatccagag
ggttggcgtgtcctgcccgatcaggtgcgcgagtggctggacctgcaaaattacgcttcg
gtgctgcccgacagcgacagccttttggtggaaacatttccgcgtgccgacaagcactac
atggtctgctatcccttcgagggacgcctggcccatcagacattgggaatgttgctaacg
cgaaggctcgagcgggcccgagcgcagcccttgggcttcgtcgcttccgattatgcgctg
gccatctggtgcgccgccgaccttggagcgttgatcgcttcggatcggctttcgctcgat
caattgttcgatgaggatatgctgggtgacgatctggaggcctggctcgatgagtcggcg
ctgatgaagcgaaccttccgaaattgtgctatcatttcggggcttatcgagcgtcggcat
ccgggcaaggaaaaatcggggcgtcagatcaccgtaagctcggacatcatctatgacgtg
ctctaccagcacgagcccgatcatattctgatcgaagccacgcggcgcgatgctgcgcgg
ggattgctcgatatcgaacgtctcgggctcgccctgagacgcatcaggcggcacatcagg
cacaagcggctggaccgaatctcgcctcttgcggtacctgtactgctcgacatcggcaag
gagccgatctttggggaagcgcgcgaagcggttctgcgcgaggctgcagaggatttgatc
gcagaggcgatcggcacagatattccgacgaaccagggatag

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