Pelagibacterium flavum: OF122_17235
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Entry
OF122_17235 CDS
T08676
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OF122_17235 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pem03019
]
OF122_17235 (recQ)
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_17235 (recQ)
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_17235 (recQ)
Messenger RNA biogenesis [BR:
pem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OF122_17235 (recQ)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OF122_17235 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
ResIII
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
UYQ71763
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All DBs
Position
3433900..3435735
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AA seq
611 aa
AA seq
DB search
MSLFSNATAIDAAPAGGLDILRSVFGLDAFRGQQQEVVEHVMGGGDAVVLFPTGAGKSLC
YQIPAIGRRGVGVVISPLIALMRDQVEALRQAGVKAAALNSSLSPDENRSVRQALRDGEL
DLLYVAPERLAAAGFLELLASVEIGLFAIDEAHCVSQWGHDFRPEYRELAKLRELFPHVP
RVALTATADPTTRADLIERLGLEEAQLFISSFDRPNIGYSIVERANARAQLLDFLGRHKG
ESGIVYCLSRAKVEAIAEFLNDKGIAALPYHAGLDSSVRARNQDAFLKEDALCLVATVAF
GMGIDKPDVRYVAHMDLPSSIEAYYQETGRAGRDGQPSEAWMCYGLSDVSQRRRMIAEGN
APDEIKRLENTKLSALLGVCETAGCRRQAVLAHFGEQHQGNCGNCDTCINPVDSWDGTEA
ANKVMSSIYRTGQRFGAAHVIDVVMGKVTEKVEKFRHQHLPVFGVGQDISVKTWRSVVRQ
LTAMGLVHVNHEAHGALYLDEGARAVFRGERTVTLRRDHERKKSDTNRALGSGEALSPEA
EAVFERLRRKRRELASAQGVPPYVVFQDTTLRAMAQHKPATLDQLRALPGVGDAKLERYG
TAFLAAIASAD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcttttccaacgctacggccatcgacgctgcgccggccggtgggctggacatc
ttgcgatcggtgttcgggctggatgccttccgtgggcagcagcaagaggttgtcgagcat
gtgatgggcggcggcgatgccgtggtcctgtttcccacaggggcggggaaatcgctgtgc
tatcagatcccggcgattggccgacgaggggtcggtgttgtcatttcccccctgatcgcc
ctgatgcgcgatcaggtcgaagcgctcaggcaggccggtgtcaaagctgcggctctcaat
tcctcactctcgcctgacgagaaccgaagcgtgcggcaggccctgcgcgacggggagttg
gaccttctctatgtggccccggagcggttggcggcggcgggatttcttgagctgctggcc
agcgtcgaaatcgggcttttcgccatcgatgaagcccattgcgtgagtcagtggggccat
gatttccggcccgaatatcgcgaactggccaagctgcgcgagctgtttccccatgtgcca
cgcgtcgcgctgaccgcgacggcggatccgacaacgcgcgccgatctgatcgagcggctg
gggcttgaggaagcgcagcttttcatatcgagttttgatcgccccaatatcggttattcg
attgtcgagcgcgccaatgcgcgagcgcaattgctcgatttcctgggccgacacaagggc
gaaagcggtattgtttattgcctgtcgcgcgccaaggtggaggcgatcgccgagtttctc
aatgacaagggtattgccgccctgccctatcatgcgggactcgattcgagcgtgcgggcg
cgcaatcaggatgcgttcttgaaggaagacgctttgtgccttgttgccaccgtggccttc
gggatggggatagacaagcctgacgtgcgctatgtggcacatatggatctgccctcctcg
atcgaggcctattatcaggaaacgggccgggccgggcgcgacggtcagccctcggaagcc
tggatgtgttatgggctgtcagatgtgagccagaggcggcgcatgattgccgaaggcaat
gcgcccgacgaaatcaaacggctcgaaaacaccaagctcagcgcccttctgggcgtatgc
gagacggcgggctgccggcggcaggcggttctcgcccatttcggcgaacagcatcaaggc
aattgcgggaactgcgatacctgcatcaacccagtcgatagctgggacggcaccgaggcc
gccaacaaggtgatgtcctcgatctatcgcaccgggcagcggttcggtgcggcgcatgtg
atagatgtggtgatgggcaaagttaccgaaaaggtggagaaattccggcaccagcatttg
ccggttttcggcgtggggcaggacatttcggtcaagacctggcgctcggtggtgcggcag
ctaacggccatggggctggtgcatgtgaaccatgaggcccatggcgcgctttatctcgac
gagggtgcgcgggcggtatttcggggcgaacggacggtgacgctgagacgcgaccacgag
cgcaagaaatcggacacgaaccgtgcgctgggttcgggcgaagcgctgtcgcctgaggcc
gaggctgtgttcgagcggctgcggcgcaaacggcgcgaactcgcttcggcgcagggcgtc
ccgccctatgtggtgtttcaagacacaacgttgcgggccatggcgcagcacaaacccgcg
acgctggaccagttgcgagccctgcccggcgtgggtgatgccaagctggagcgatatggc
acagcattcctcgcggcgatagccagcgcggactag
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