Pelagibacterium flavum: OF122_19275
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Entry
OF122_19275 CDS
T08676
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_19275 (addA)
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_19275 (addA)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OF122_19275 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
Terminase_6N
DEAD
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UYQ72147
LinkDB
All DBs
Position
3866203..3869616
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AA seq
1137 aa
AA seq
DB search
MSEEILSVPFDTTAKQARVAEPRANAWVSANAGSGKTYVLARRVLRLLLDGAQPEAILCL
TYTKAAAAEMRHRVTGILAVWARADEAELERELAVLLGQRPSPNEKLRARSLFAHALDTP
GGLKINTIHAFCEAVLQRFPREAGVPVNFTVIEEADATALLREAREGVIAEGLKAEGPVG
AAVRALFNALSDSQIETAIAQCLANNRKLGPILADPEQAIAAMRGSMGVGPGETIEAFNR
GVVDGMLVSTGEYSVIWSLTPPGVAKRAGFEDKLERIDRAAPTAAQLFAAYLTAAGTAPK
RGFPAKAIAASMPELAERLAAEAERLEALFEKSKALTIAENSAALTRVLAAILKRYETKK
RARSLMDFDDLVARTAALLGDRGMGEWVRYKLDAGIDHILVDESQDTNPEQWAVIDALVD
DYFSGAGAAQKPKTIFAVGDPKQSIYSFQGAEPKLFLDKGRALAAAAKAAGRDWYGETLE
TSFRTLGEILNGVDKVFNRPDIAASLLTETVRHEAARTRKGGRIEIWPVIENPHSPDIPE
AWPTAPVESLAAAPRQLANKIADTIAGWIESRAPIGPGGRAIRPEDILILVQKRKGIFPE
IVRALKQRNIVSPGADRLPVSAHIAIDDLLGLADFLLNPADDLTLAAILRSPLFSISEDE
LFTLAHGRGPMSLFERLASSELEAAQTAFERLSGLRQRLDFDRPYEFFAHVLYGQDGLKQ
FHARLGEEVDEVIAEFLDLALEHETSDQPSLTGFVAAMRASDIVIKRDLVAKAAGVRVMT
VHGAKGLEAPVVILADAATKPRAVSDCVFFGTHDGDAFLLYCPSKDHHCEASRPLRAEVE
ARNIAEYWRNLYVGMTRAEEALHIAGTLDSRTKVEETWFGAVSDALEDESATISDHRGEV
LRFPALEPEELTGGNTSDDLRASIQPLTLGRAQRRKGLPIITPSRHDEMWVPSGLETVAE
RLLDARGARMRGIALHALLQYLSAVPQDRQAAVALSAAHTLLPDDPELAGPVAERGLAIL
SDPALAGLFGADSRAEVPFSLKVLQGGAEARLEGRIDRLVVGESVLVVDYKSDAGVPGGP
EAVSAGYARQLALYRLAAQRLFSGKRIEAAILWTENSRLMSIPPELLDAAAGDVTVL
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggaaatcctttccgttccattcgacaccaccgccaagcaggcgcgggtggcc
gagccgcgggccaacgcctgggtttcggccaatgcagggtcgggcaagacctatgtgctc
gctcgccgggtgctccggctgctgctcgacggcgcgcagcccgaagccatcctgtgcctg
acctataccaaggcggcggccgccgaaatgcggcaccgggtaacgggaattctggcggta
tgggcgcgggccgatgaagccgagcttgaacgcgagctggccgtactgttggggcagcgg
ccgagcccgaacgaaaagctgcgggcgcggagccttttcgcccatgcactcgacacgccg
ggcgggctcaagatcaacaccatccacgccttttgcgaggcggttttgcagcgctttccg
cgcgaggctggcgtgccggtcaatttcaccgtcatcgaggaggcggacgccacggcgctg
ttgcgcgaggcgcgcgagggggtgatcgccgaggggctcaaagcagaagggccggttggc
gcggcggtgcgggcgctgtttaacgctctgagcgacagtcagatcgaaaccgccattgcc
caatgcctagccaacaatcgcaagctggggccgatccttgccgatcccgagcaggcgatt
gcggcaatgcggggcagcatgggggtggggccgggcgaaacaatcgaagcgttcaatcgc
ggcgtcgtggacgggatgctggtttcgaccggcgaatattccgtgatctggtcgctgacg
ccacccggcgttgccaagcgggccggattcgaggacaagctcgaacggatcgaccgggca
gcacccaccgcagcccagcttttcgccgcttatctgacggcggcggggacggcgcccaag
cggggatttccggccaaggccattgcagcttccatgcccgaactggccgagcggctggcg
gccgaggccgagcggctcgaagcgctgtttgaaaaatcgaaagcgctgaccattgccgag
aacagcgcggcgctgacaagggtgctggcggcgatcctcaagcgttatgagaccaaaaag
cgggcgcgttcgcttatggatttcgacgatctggtggcgcgcactgcagctctgctcggc
gacaggggcatgggcgaatgggtgcgctacaagctcgatgcggggatcgaccacatcctt
gtcgatgaaagccaggacaccaatcccgaacagtgggcggtgatcgacgctctggtcgac
gattatttttccggtgcaggggcggcacaaaagcccaagacgatctttgcggtgggcgac
cccaagcaatcgatctattcgtttcagggggccgagccaaaactgtttctggacaagggg
cgcgcgctggcagcggcagccaaggcggcggggcgcgactggtacggggaaacgctggaa
accagtttccgtacgcttggtgaaatcctcaatggcgtggacaaggtgttcaaccggccc
gatatcgctgcgtcgcttttgaccgaaacggtccggcacgaggcggcgcggacgcgaaag
ggggggcggatcgaaatctggccggtgatcgagaacccccacagccccgatatccccgag
gcatggccgacagcgcccgtggaaagccttgcggcagcgccgcggcaattggccaacaag
attgccgataccattgccggctggatcgaaagccgggcgccgatcgggccgggaggcagg
gcgataaggcccgaggacattctgatcctcgttcagaaacgcaagggaatttttcccgag
atcgtgcgggcgttaaagcagcgcaatatcgtcagccccggcgccgaccggctgccggtt
tcggcccatatcgccattgacgatcttttggggcttgccgattttctgctcaatccggcc
gacgatctgacactggcggcaatcctgcgctcgccactgttttcgatttccgaggatgag
ttgttcacgctggcccatgggcgcggaccgatgagcttgttcgagcggttggcgagcagc
gaactggaggcggcgcagaccgcatttgaacgcttgagcggactgcggcagcggctcgat
ttcgaccggccctacgagtttttcgcgcatgtgctttacgggcaggacgggctgaaacag
tttcacgcgcggctgggcgaggaagtggacgaggtgatcgccgaatttttagatctggcg
cttgagcacgagacatccgaccagccctcactgaccgggttcgttgccgcaatgcgggcg
tccgatatcgtgatcaagcgcgatctggtggccaaggcggcgggcgttcgggtgatgacc
gtgcatggggcaaaggggctcgaggcgccggtggtgattttggccgatgccgcaaccaag
cctcgggcggtatccgactgcgtctttttcggcacccatgatggcgatgcgtttctgctc
tattgtccaagcaaggatcatcattgcgaggcctcgcggccgctgcgggccgaggtggaa
gcacgcaatatcgccgaatactggcgcaatctctatgtggggatgacgcgggccgaagag
gcgctccatatcgcgggcacgctcgacagccgcaccaaggttgaggaaacctggttcggc
gcggtttcggacgcgctggaggacgagagcgccacgatatcggaccatcggggcgaggtg
ttgcggtttccggctctggaaccggaagaattgacgggcgggaacacgagcgatgatttg
cgtgcctcaatccaaccgctgacgctggggcgagcgcagagacgcaagggattgccgatc
atcaccccatcgcggcacgatgagatgtgggtgccgtcgggactggagacggtggcggaa
agactactcgatgcgcgtggggcgcggatgcggggcatcgcgttgcatgccctgctgcag
tatttgagtgccgtacctcaggaccggcaggcagctgtggcgctgagcgcggcgcacacg
cttttgcccgacgatcccgagcttgccgggccggtggcagagcgggggctggcgatcctc
tccgacccggctttggccgggctgttcggggccgacagccgggcagaggtgccgttttca
ctcaaagtgctgcagggcggcgccgaggcgcggctggaggggcggatcgaccggctggtt
gtcggggaaagcgttctggtggtcgattacaaatccgacgccggcgtgccgggcgggccc
gaggcggtctcggcggggtatgcgcgccagttggcgctgtaccggctggccgcgcagcga
ctgttttcgggcaaaaggattgaggcggctatcctgtggacggaaaattcgcgcctgatg
agcattcctcccgaattgcttgacgcggcagcgggcgacgtcacggtgctgtga
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