Pelagibacterium flavum: OF122_19535
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Entry
OF122_19535 CDS
T08676
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pem03016
]
OF122_19535 (truB)
Enzymes [BR:
pem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
OF122_19535 (truB)
Transfer RNA biogenesis [BR:
pem03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
OF122_19535 (truB)
Prokaryotic type
OF122_19535 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
UYQ72196
UniProt:
A0ABY6INK8
LinkDB
All DBs
Position
complement(3909759..3910670)
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AA seq
303 aa
AA seq
DB search
MSEAQKKRVKRDLSGWLVFNKPYDMSSTEAVGKLRWLYGAKKAGHAGTLDPLATGILPIA
FGEATKTVPIVQDGTKIYHFDIVWGQATSTDDIEGEVIATSDVRPTGKALEAVLPRFTGL
ITQIPPAFSAIRIGGERAYDLARAGHKLDMPPREVEIDALEVIAHTPERSKLSVTCSKGT
YVRALARDIAEALGTRGHVGALHRAQVGNFTDADAVALEQVESIDLAARDALLLPVAAGL
ADLPEIRLDARQAATIRLGNPVLLTGRDAPVALDEAWASLKGEAVALGFVEAGQFKPRRV
ILG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaagctcaaaaaaagcgcgtcaagcgcgacctgtccggctggcttgtgttcaac
aagccctatgacatgagctccaccgaagctgtgggcaagctgcgctggctctatggcgcc
aagaaagccggtcacgctggcaccctcgatccgctggccaccggcatcctgcccattgcg
ttcggagaggcgacaaagaccgtccccatcgtccaggacggcaccaagatctatcatttc
gatatcgtctggggccaggccacctctaccgacgatatcgagggcgaggtgatcgccacc
tccgatgttcgccccaccggcaaagcgcttgaagcggtcctgccgcgctttaccgggctg
atcacccagatcccgcccgccttttcggccatcaggatcggcggggagcgcgcctatgat
ctggcccgcgccggccacaagctcgatatgccgccccgcgaggtcgaaatcgacgctctc
gaagtgatcgcgcatacccccgagcgcagcaaactctcggtcacctgttccaagggcacc
tatgtccgcgccctggcgcgcgatatcgccgaggcgctcggaaccaggggccatgtcggc
gccctgcaccgcgcccaggtcggaaatttcaccgatgccgacgccgttgcgcttgaacag
gtcgaatcgatcgatcttgcggcgcgggacgcgctgttgctccctgtcgccgcgggtctg
gccgatctgcccgagatccggcttgacgcccgccaggcggcaaccatccggctgggcaac
ccggtgcttttgacgggtcgcgacgcgcccgtggcccttgatgaggcatgggcatcgctc
aagggcgaagccgtggcgctcggtttcgtcgaagcgggccagttcaagccccggcgggta
atcctcggctag
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