Pelagibacterium flavum: OF122_19575
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Entry
OF122_19575 CDS
T08676
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pem
Pelagibacterium flavum
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pem03016
]
OF122_19575
Enzymes [BR:
pem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OF122_19575
Transfer RNA biogenesis [BR:
pem03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OF122_19575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UYQ72202
LinkDB
All DBs
Position
3915825..3916442
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AA seq
205 aa
AA seq
DB search
MSVRLHKGDLPDLSRYTGRQVAIDTETMGLNPARDRLCVVQLSPGDGTADVVQILPGQTE
APNLAALLADETKTKLFHFARFDMAALFAAFGVMTTPVYCTKIASKLVRTYTDRHGLKDL
SRELLGVDMSKQQQSSDWGAETLSQAQLDYAASDVLYLHDLRRHLDRMLAREGRTEMARA
CFEFLPTRAHLDLAGWPETDIFAHS
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcgactgcacaagggcgatctgcccgacctttcccgctacaccggacggcag
gtggccatcgataccgagaccatgggccttaatccggcacgcgaccggttgtgcgtcgtg
cagctttcgcccggcgacggcacggccgatgtggtccagattcttcccggacaaaccgaa
gcgcccaaccttgctgcgcttctggccgacgagaccaagacaaagctctttcatttcgcc
cgcttcgacatggcggcgctttttgccgcgttcggggtgatgaccacgccggtctattgc
accaagatcgcttcgaaactggtgcggacctataccgaccggcatgggctgaaagatctc
tcgcgcgaacttctgggcgtcgatatgagcaagcagcagcaatcgtctgactggggggcg
gaaacgctgagccaggcccagctcgattatgcggcctccgacgtgctctatctgcacgac
ctgcgccggcatctcgaccgcatgctggcccgcgaagggcggaccgagatggccagggcc
tgtttcgagttcctgcccacccgcgcccacctcgatctcgccggctggcccgagaccgac
atcttcgcccacagctag
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