Pelagibacterium flavum: OF122_19595
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Entry
OF122_19595 CDS
T08676
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pem
Pelagibacterium flavum
Pathway
pem02020
Two-component system
pem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OF122_19595 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OF122_19595 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pem03021
]
OF122_19595 (rpoN)
Transcription machinery [BR:
pem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OF122_19595 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UYQ72205
LinkDB
All DBs
Position
3918566..3920065
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AA seq
499 aa
AA seq
DB search
MALSPRLDVRQTQSLTLTPQLMASIRLLQLSHLELSAFVDAELMRNPLLESTDAPDGDTP
MERERAEEIDPYRDVVDHSDHLGSAMTIADSLDTDVSNVFPEQSGQDSLSQSSSWPEGKG
GALGGEAPDIDQYVSAQISLADHLAEQVNLILKDPAERLIARSLVDNLDERGYLMAEIGQ
IAEQLGAEAATVEAVLSKVQGCEPLGVFARSLAECLAIQLADKDRLDPMMAGLLAHLDLV
ASHDLALLGKKIGADREDILDMLAELRELDPRPGRAFDFSPVQSVVPDVFVRRGNDGGWQ
VELNSEVLPRVLVNRVYYASISKKTRDAEEKTFLVDCLNTANWLTKSLDQRAQTILKVAT
EIAKQQDGFLRHGISHLRPMTLKAVASEIEMHESTVSRVTANKYIATPRGLFEMKYFFTT
ALNSSSGGDDHSAEAVRHRIRQLIEAERPEAILSDDTIAEMLKNEQGIDVARRTVAKYRE
GMGIASSVIRRRQKKAQMA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttcgccacggctggatgtccggcaaacccagtccttgacactgacgccgcaa
ttgatggcgtcgatccggcttttgcagctgagccatctcgagctcagcgcatttgtcgat
gccgaactgatgcgcaatcccctgctcgaaagcaccgacgcgcccgatggcgatacgccc
atggagcgcgagcgggccgaggaaatcgacccctatcgcgacgtggtcgaccattccgac
catctgggcagcgcaatgacgattgccgacagcctcgataccgacgtgtccaacgtcttt
cccgaacaatcggggcaggattcgctgagccaatcgagctcgtggcccgagggcaagggc
ggcgcgctggggggcgaggcgcccgatatcgatcagtatgtttccgcccagatctcgctt
gccgaccatctggccgaacaggtcaatctgatcctcaaggaccccgcggagcggctgatc
gcgcgcagccttgtcgataatctcgacgagcgcggctatctgatggccgagatcggccag
atcgccgagcagctgggggcagaagcggcgaccgtcgaagcggtactgagcaaggtgcag
gggtgcgagccgcttggggttttcgcccgctcgcttgccgaatgtcttgcgatccaattg
gccgacaaggacaggctggaccccatgatggccgggctgctcgcccatctcgacctggtg
gccagccacgatctggcgcttctgggcaaaaagatcggcgcggaccgcgaggacatcctc
gacatgctggccgaattgcgcgaactcgacccgcggccgggccgagccttcgatttttcc
ccggtgcaatcggtggtgcccgatgtgtttgtcagacgcggcaatgacgggggttggcag
gtcgagctcaattccgaggttctgccccgggttctggtcaaccgggtttattatgcctcg
atttcgaaaaagacccgcgatgcggaggaaaagacctttcttgtcgattgcctcaatacg
gcgaactggctgaccaagagcctcgaccagcgcgcccagacgattctgaaagtggcgacc
gagatcgccaagcagcaggacggatttctgcggcacgggatttcccatctgcggcccatg
acgctcaaggccgtggcgagcgagatcgagatgcacgaatcgacagtgtcgcgcgtgacg
gcgaacaagtacatcgccacgccgcgcgggctgttcgagatgaaatatttcttcaccacc
gcgctcaattcctcttcgggcggcgacgaccattcggctgaggccgtgcgccaccgcatt
cgccagttgatcgaagcggaacggcccgaggcgatcctttcggacgatacgattgccgaa
atgctcaagaacgagcagggaatcgacgtggcgcgacgcaccgtggccaaataccgcgag
ggcatgggcatcgcctcctcggtgatccggcggcgccagaagaaagcgcaaatggcgtaa
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