Pseudomonas entomophila: PSEEN0615
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Entry
PSEEN0615 CDS
T00362
Name
(GenBank) conserved hypothetical protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pen
Pseudomonas entomophila
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pen03016
]
PSEEN0615
Enzymes [BR:
pen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSEEN0615
Transfer RNA biogenesis [BR:
pen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSEEN0615
Prokaryotic type
tRNA splicing ligases
PSEEN0615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
CAK13556
UniProt:
Q1IFJ8
LinkDB
All DBs
Position
626624..627829
Genome browser
AA seq
401 aa
AA seq
DB search
MNILEVAGGKPIKLWTDGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRTAIEKAVPHGKTFGQRDQGAW
DDVPNQADQVWSGLAGRFKAITDKYPRLEKTNNRQHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHMANLPNRDLAYFEEGSRHFADYVEAVEWAQDFA
RHNRELMMLAVVAATRRVLGRPFEASLEAVNCHHNYVQKEQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQQRATAHVECR
KDKDVIDEIPMAYKDIDAVMHAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactcgaagtggcgggcggcaagccgatcaaactgtggaccgacggtgtgccg
gtcgaggacgacgcccgcaagcaactgatgaacacggcgaagatgccgttcatcttcaag
cacctggcggtgatgccggacgtgcacctgggcaagggctcgaccatcggcagcgtgatc
cccaccgtgggcgcgatcattccggcggcggtgggcgtggacatcggttgcggcatgatc
gccgcgcgcacctcgctgcacgcccgcgacctgccggacaacctgcacggcctgcgcacc
gccatcgagaaggccgtgccccacggcaagaccttcggccagcgcgaccagggcgcctgg
gacgacgtaccgaaccaggccgaccaggtgtggagcggactcgctgggcgcttcaaggcg
atcaccgacaagtacccgcggctggagaagaccaacaaccgccagcacctgggaacgttg
gggggcggcaaccatttcatcgaagtctgcctggacgaggccgaccgcgtctggttcatg
ttgcacagcgggtcgcgcggtgtgggtaatgccatcggcaacctgttcatcgaactggcc
caggccgacatgcgccagcacatggccaacctgccgaaccgggacctggcgtacttcgag
gaaggcagccgccacttcgccgactatgtcgaggcggtggaatgggcgcaggatttcgcc
cggcataaccgcgagctgatgatgctggcggtggtcgccgcgacccgcagggtcttggga
aggccgttcgaagccagcctcgaggcggtgaactgccaccacaactacgtgcagaaggag
cagcacttcggtcgtgaggtgctggtgacccgcaagggcgcggtgtcggcgcagaagggc
cagctgggcatcatcccgggctcgatgggcgccaagagcttcatcgttcgcggcctgggc
aacgaggaatcgttctgctcgtgcagccacggcgcgggccgggtgatgagccgcaccaag
gccaagagccgcttcaccgtcgaggaccagcagcgcgccaccgcccatgtggagtgccgc
aaggacaaggacgtgatcgacgagatcccgatggcctacaaggacatcgatgccgtcatg
catgcccagcgcgagctggtcgaagttgtgcacaccctgcgtcaggtggtgtgcgtgaaa
ggttga
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integrated database retrieval system
