Pseudomonas entomophila: PSEEN1608
Help
Entry
PSEEN1608 CDS
T00362
Name
(GenBank) putative ribonuclease E Rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pen
Pseudomonas entomophila
Pathway
pen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEEN1608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pen03019
]
PSEEN1608
03009 Ribosome biogenesis [BR:
pen03009
]
PSEEN1608
Enzymes [BR:
pen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSEEN1608
Messenger RNA biogenesis [BR:
pen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSEEN1608
Ribosome biogenesis [BR:
pen03009
]
Prokaryotic type
rRNA processing factors
PSEEN1608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAK14467
UniProt:
Q1ICZ6
LinkDB
All DBs
Position
complement(1676027..1679254)
Genome browser
AA seq
1075 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKPPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASQDRVAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPDVLSSQSSYEIASTEAEEAPQPTATRTLVRQEAAVKTAPARANAPAPAVA
EEPAAPAAPVQSAPEPSLFKGLVKSLVSLFAGKEEPAAAPAVNTEKPATERSSRNEERRN
GRQQSRNRGGRRDEERKPREERNERAPREERQPREERAPREERAPREERQPRQPREDRRG
NREERVRELREPLDAAPVAREERQPREERAPREERAPREERTPREERAPREERAPREERA
PREERAPREERAPREERAPREERAPREERAPREERQPRPPREERQLRPDEQVAEQAAELT
EEQLPNEELLLDEQEGADGERPRRRSRGQRRRSNRRERQRNANGELIEGDEDGSEEQQPQ
QHQASELGAELAAGIAVTAAVATSNISTDAEAEANQQAERANAAVAETQVEITEVVAEQV
SIAPVVEQPVSEPAVVVEPSIEPVVEVAPQPVVEAAVEQPVAIVEAAVESAPVEQAPVVE
AGEIEKASVVEAVEAPVAEQPAPHVEAKPAEVQAEVVEAAAAEPAPVVAEQAPVEEAAAP
VEPSTIMLPNGRAPNDPREVRRRKREAEAAAALAAAQAAPAEALETADEHKPHHG
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgcctctacgacctggacatcgagtccggcgcccgtgagcagaagaaggccaac
atctacaaaggcaagatcacccggatcgagcccagccttgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaag
ccccccgaaggccgggtcaacatcaaggaagtactgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgcgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctgaccgttccgggc
gacatgggcctgatcgtgcgcaccgcgggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcagctgtggaccgccatcaaggaagcctcgcaagaccgcgtc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgtgtggtc
gacctgccgtctggcggctcgatcgtcatcgacccgaccgaagccctggtctccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaggaaaccgcgctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagcgtgtg
cgtgaatgcctggaagccgaccgcgcccgcgtgcaagttggccgcatttcgcgcttcggc
ctgctggagatgtcccgccagcgcctgcgcccatcgctgggtgaaagcagtggcatcgtc
tgcccgcgctgctccggcaccggcatcatccgtgacgtcgagtcgctgtccctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtgcgtgcccaggta
ccgattccggtggctgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgatcacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaacccggacgtgctgagcagccagtccagctacgag
atcgcctcgaccgaagcggaagaagccccgcagccgaccgccacccgcaccctggttcgc
caggaagccgcggtcaagaccgcaccggcacgcgccaacgccccggcaccagccgtcgct
gaagagccagccgcaccggccgcgcccgtacagagcgccccggagccgagcctgttcaag
ggcctggtcaagtcgctggtcagcctgttcgccggcaaggaagaacctgccgccgcaccg
gccgtgaacaccgagaagccggccaccgagcgctcgtcgcgcaacgaggagcgtcgcaac
ggtcgccagcagagccgcaaccgtggcggtcgtcgcgatgaagagcgcaagccgcgtgaa
gagcgcaacgagcgtgccccacgtgaagagcgtcaacctcgcgaagaacgcgccccacgt
gaagagcgtgcgccgcgtgaagagcgccagccacgccagcctcgtgaagaccgtcgcggc
aaccgcgaagagcgtgtacgcgaactgcgcgagccactggatgccgcaccggtagcccgt
gaagagcgtcagccacgtgaagaacgcgcaccgcgtgaagagcgtgcgcctcgcgaagaa
cgcacaccacgtgaagagcgtgctccacgtgaagagcgcgcaccgcgtgaagaacgcgct
ccacgcgaagagcgcgcacctcgtgaagaacgcgccccacgcgaagagcgtgcgcctcgt
gaagaacgtgccccacgtgaagaacgcgcacctcgtgaagagcgtcagcctcgtccgcca
cgtgaagagcgccaactgcgtcctgacgagcaggtagccgaacaggccgccgagctgacc
gaagagcaactgccgaacgaagaactgctgctggacgagcaggaaggcgccgatggcgag
cgtccgcgccgccgctcccgtggccagcgtcgccgcagcaaccgtcgtgaacgtcagcgc
aacgccaatggcgagctgatcgaaggcgacgaagacggcagcgaagagcagcagccacag
cagcaccaggccagcgagctgggtgccgaactggccgccggcatcgccgtcactgccgcc
gttgccaccagcaacatcagcactgacgccgaagccgaagccaaccagcaggccgaacgc
gccaacgccgccgtagccgagacccaggtggaaatcaccgaggtcgtcgccgagcaggtc
agcatcgcccccgtggtggaacagcctgtcagcgagccggccgttgttgtagagccgagc
atcgagcccgtggttgaagtggcaccccagccggtggtcgaggcagccgtcgagcagcct
gtcgccatcgttgaagcggccgtcgaatcggcaccggtcgagcaagccccggtagtggaa
gctggcgaaatcgaaaaagcgtcggtcgtcgaagctgtcgaggctccggttgccgagcaa
cctgctccgcacgtcgaggccaagcctgccgaagtgcaagctgaagtggtcgaagccgca
gcagccgagcctgcgccggttgtcgccgaacaggcgccggtcgaagaggcagccgctccg
gtcgagccgtccaccatcatgctgccgaacggccgtgcgccgaacgacccgcgtgaagta
cgccgccgcaagcgtgaagccgaggcggctgcagccctggctgccgcccaggccgcaccg
gcagaagccctggaaaccgctgacgagcacaagcctcatcacggttga
DBGET
integrated database retrieval system
