Pseudomonas entomophila: PSEEN3969
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Entry
PSEEN3969 CDS
T00362
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pen
Pseudomonas entomophila
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pen03019
]
PSEEN3969 (hrpA)
Enzymes [BR:
pen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSEEN3969 (hrpA)
Messenger RNA biogenesis [BR:
pen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSEEN3969 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
T2SSE
ResIII
NACHT
AAA_30
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CAK16673
UniProt:
Q1I6R0
LinkDB
All DBs
Position
complement(4270948..4274853)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLQNLDHAMIADRHRLRRQLHELRKRPDEGKLAQWVEKVQASCAQVTARQQS
VPTIRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSQHFDGAPII
EVSGRTYPVDTWYRPLTSEQDEEGNQVEDDLTVDQAILATLDEIAHHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLTPAEQQKIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRMGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPCDYQRMHKAILSGLLSQIGHKAEEGDYQGARQRRFWIHPSSGIG
RKRPQWVMTAELVETTKLYARMVAKIEPDWIEPLATHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLIIVGRRPVHFGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPEEIHQTATFDAWYRMTSQKDPNLLIMREEDVLAREAS
EVTAAQYPDHLQVGELRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALSRLAFGQGALPQALGHELLRMTGARVSDEAWA
EAASLVEGHLRMNIEVVDAQGKFLGEGRDLAELTARFAAASQAALALPRNEKAEQPVQAK
AFSQVAQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVEALVEDILLASLDSCVLEGEDPLPRDGAGLASLAE
RKRGNWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLTQAVALNDIKQQLANLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANCWAQYKARADKHAQEGKRDE
QLTVYRWLLEEYRVSLFGQQLGTKVPVSDKRLSKQWSLVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccagttgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcggcggcaactgcatgagctgcgcaagcgccccgacgagggcaagctc
gcgcagtgggtggaaaaggtccaggcctcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgaccatccgctacgacgacagcctgcccatcgccgccaagcgcgacgagatcaag
aaggccctggccgagcaccaggtgctggtgatcgccggcgagaccggttcgggcaagacc
acccagttgcccaagatctgcctggaactcggccgtggcagccacggcctgatcgcccac
acccagccccggcgaattgccgcgcgcagcgtggcggcgcgggttgcagaggagctgggc
acaccgctgggggcgttggtcggctaccaggtgcgcttcgaggaccagagcgattcgaac
accctggtcaagctgatgaccgatggcatcctgctggccgagacccagcacgaccgcttc
ctcgaacgctatgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctcaagaccctgctgcaccgccgcccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctcgcagcacttcgacggcgcgcccatcatc
gaagtgtcgggccgcacctacccggtggacacctggtaccgcccgctgaccagcgagcag
gacgaggagggcaaccaggtcgaggacgacctcaccgtcgaccaggcgatcctcgccacc
ctcgacgagattgcccaccacgagcgcagccagggcaagggcccgggcgacgtgctggtg
ttcctgcccggcgagcgagagatccgcgatgccgccgagatcctgcgcaaggcccagctg
cgccacaccgagatcctgccgctgtatgcgcgcctgaccccggccgagcagcagaagatc
ttccagtcccacagcggccggcgcgtggtgctggcgaccaacgtcgccgagacttcgctg
accgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgtctgccgatcgaggcggtctcgcaggccagcgccaaccag
cgtaaaggtcgctgcggccgggtcgagccgggtatctgcatccgcttgtacagcgaggat
gatttcaacggccggccggcattcaccgacccggagatcctgcgcaccaacctggccgcg
gtgatcctgcagatgctgcacctgcgcctgggcgccatcgatgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgacggcttcaacctgctgcaggagctgtcggcggtc
aatcgcgagaaccagctcacgccgctggggcgccagctggcgcgcctgccgatcgacccg
cggatgggccgcatgctgctcgaaggcgcgcgccagggcagcctgcaggaagtgctgatc
gtcgccagcgccctgtcggtgcaggacccacgcgagcgcccgccggagcgccagcaggcc
gccgaccaggcccacgcgcagtggaaggacgtcgattccgacttcgccgcgctggtcaac
ctgtggcgcggtttcgaggagcaacgccaggcgctgaccgccagcccgctgcgcaactgg
tgccgcaagaacttcctgaattacctgcgcctgcgtgagtggcgcgatgcccatcgccag
ttggcgctgatctgccgcgacctgcagctgacggtgaacaaggaaccgtgcgactaccaa
cgcatgcacaaggccatcctcagcggcctgctcagccagatcggccacaaggccgaagag
ggcgactaccaaggcgcgcgccagcgccgcttctggattcacccgtcgtccggtatcggc
cgcaagcgcccgcagtgggtgatgactgctgaactggtggaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgagccgctggccacccacctgatcaag
aagaaccacttcgagccgcactgggagaagaagcgcgggcaggtggtggcctacgagcag
atcaccctgtacgggttgatcatcgtcggccgcaggcccgtgcacttcggcccgatcgac
ccggccacttcccgcgagctgttcatccgcgaaggcctggtcggcggcgagatccagtcg
cgggccaagtgcctggcagcgaacaagcgcctgctcgaacagttggacgaactggaggcc
aaggctcgccgacgtgacatcctcgccgacgaagagacgctgtacgccttctatgaagcg
cgtttgccggaagaaatccaccagaccgcgaccttcgacgcctggtaccggatgaccagc
cagaaggacccgaacctgctgatcatgcgcgaggaagacgtgctggcccgcgaggccagc
gaagtcaccgccgcgcagtacccggaccacctgcaggtgggcgagctgcgcctgtcgctg
agctaccacttcgaaccgaaccacccacgtgacggcgtcaccgtgcgggtgccggcgccg
ctgctgccgaacctgccgggcgagcgcctggagtggctggtgcccggcctgctggaagcc
aagtgcatcgccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggccttgtcgcgcctggccttcgggcagggcgcgctgccccag
gcgctgggccatgagctgctgcgcatgaccggggcacgggtgtccgacgaggcctgggcc
gaagccgccagcctggtcgaggggcacctgcgcatgaacatcgaggtggtcgacgcccag
ggcaagttccttggcgaaggccgcgacctggccgagctgactgcgcgcttcgccgccgcc
agccaggccgcgctggccctgccgcgtaacgagaaggccgagcaaccggtacaggccaag
gcgttctcgcaagtggcgcagaccgcccagcagaagatcgccgggctgtcgatgaccgtg
tacccggcgctggtcgaggataacggcacggtgcgcgaagggcgcttctcgacccaggcc
gaagctgaattccagcaccgccgcgccttgcagcgcctgttgctgcagcagttggcggag
ccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcttgctgtaccgc
gagctgggtcgggtcgaggcgctggtggaggacatcctgctggccagcctggacagctgt
gtgctcgaaggcgaagacccgttgccgcgtgacggcgcaggcctcgcttcgctggccgag
cgcaagcgtggcaactgggccgagcatgccgagcgcctggcgcgccagacgctggaggtg
ctgaagctgtggcatggtttgcagaagcgcttcaagggcaagatcgacctgacccaggcg
gtggcgctcaacgatatcaagcaacaactggccaatctggtatatccaggcttcgtacgt
gagacgccgggcgcctggttcaaggaattgccgcgttatctcaaggcggtggaactgcgc
ctggagaagctgggttcgcaggtgcaaaaggaccgggtatggagcggcgaactggccaat
tgctgggcgcagtacaaggcccgggccgacaagcatgcccaggagggcaagcgtgacgag
cagctgaccgtgtaccgttggctgctggaggagtaccgggtgtcgttgttcggtcagcag
ttgggcaccaaggtgccggtttccgacaagcgcctgagcaagcagtggagtctggtggaa
gcctaa
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integrated database retrieval system
