Pseudomonas entomophila: PSEEN4205
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Entry
PSEEN4205 CDS
T00362
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pen
Pseudomonas entomophila
Pathway
pen03030
DNA replication
pen03430
Mismatch repair
pen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEEN4205 (dnaE)
03430 Mismatch repair
PSEEN4205 (dnaE)
03440 Homologous recombination
PSEEN4205 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pen03032
]
PSEEN4205 (dnaE)
03400 DNA repair and recombination proteins [BR:
pen03400
]
PSEEN4205 (dnaE)
Enzymes [BR:
pen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSEEN4205 (dnaE)
DNA replication proteins [BR:
pen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSEEN4205 (dnaE)
DNA repair and recombination proteins [BR:
pen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSEEN4205 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
CAK16894
UniProt:
Q1I641
LinkDB
All DBs
Position
complement(4485249..4488773)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVSFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADSEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVIIQRDWI
APASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQRTNRAGDEEY
VHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNDEGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMFDEADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPARDTQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGEVSNDDFSGGLRL
RVKTVMTMEDARTKLAESLRLKLSHEALKGDRLSWLGELINRHRGGCPITLEYTGSDAKA
MLQFGDQWSIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctccttcgttcaccttcgcgtgcactccgaattctccctggtcgacggcctg
gtgcggatcaagccgctggccaaggccctggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcgccggg
atcaagccgatctgcggcgccgacctgtggctggccggggccgactccgaggcgccgctg
tcgcgcatctgcttcctggccatgaaccccaagggctatcgcaacctcaccgaactgatc
tcgcgcggctggaccgatggccagcgcaacggcctggtgatcatccagcgcgactggatc
gccccggcgagcgaggggttgatcgccctgtccgcgggcaaggagggcgatatcggcatg
gccttgatggccggtcgccaggctgaagccgaggtgctgctcggtgactggatgggcatg
ttcccggagcgcttctacgtcgaggtgcagcgcaccaaccgcgccggcgatgaggagtat
gtgcacgccgccgtcgcgctggccgaccagttcggcgcgccgctggtggcgaccaacgac
gtgcgtttcgtcaaacagtcggacttcgacgcccacgagacccgggtttgcatcggcgag
ggctggaccctcgatgacccgcgccgcccgcgtggctatagcgaccagcagtacctgaag
tcggccgaggaaatggcagagctgttcagcgacctgcccgacgcaattgccaacaccgtg
gaaatcgccaagcgctgcaacatcacggtgcagttgggcaagtacttcctccccgacttc
cccacgcctaatggcatgggtatcgatgattacttgcgccatgtctcccacgaaggcctg
gaagagcgcctggcggtactgtggccgaaagagaccacaccgaattacgaagagaagcgc
caggtctaccttgaccgcctgaagttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacgacgtgccggtc
gggccgggccgaggctcgggtgccggctcgctggtggcctacgtactgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgaacgtttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgaccgggtgatcgactacgtc
gccgaggcctatggccgtaacgcggtgagccagatcatcaccttcggcaccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcctggccgaccgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggagaaagcctacgagcaggaa
gagatcctgcgcgacttcctcaaaagcgacgaggacggccgcgagatctgggacatggcg
ctcaagctcgagggggtcacccgtggtaccggcaagcacgccggtggcgtggtgatcgcg
ccgaccaagcttaccgacttctcgccgatcgcctgtgacgaagagggcggcggcctggtg
acccagttcgacaaggatgacgtcgaggccgcgggcctggtgaagttcgacttcctgggc
ctgcgtacgctgacgatcatcaagtgggcgatggagatcatcaaccgcgagcagaaaaag
aacaatctgcctgacgtcaacatcgacttcatcccgctggatgaccgcaagacctacgag
ctgctgcaaaaggccgagaccacggccgtgttccagctcgaatcccgtggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcactgttc
cgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcactcggactaccagtacgaggggctcaagccggtcctggca
cccacttacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtgatggcg
ggctacacgctcggtggcgcggacatgctgcgtcgcgccatgggtaagaaaaaacccgag
gaaatggccaagcagcgcggtggcttcatcgaaggttgcgtggccaacaatatcgacgcg
gacttggcgggcaacatcttcgacctggtggagaagttcgccggctacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagacggcctggctgaagacccattac
ccggcgccgttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcgcctcgacgcgccggacgtgaacttc
tccgacttcaagttcaccgtcaacgacgaaggccgcattgtctatggcctgggcgcgatc
aagggcgtgggcgaggggccggtcgaggccattgtcgaggcccgtgcccagggtggcccg
ttcaaggacctgttcgacttctgcgagcggatcgatctcaagcgcgtcaacaagcgcacc
ctcgatgcgctgatccgcagtggtgcactggaccgcttggggccgcacttccatgacgag
atcaaggcctatcaggccaacatcgacatcaatcgcgcgaccttgctgtcggcgcttggc
gaggctgtcaaggctgccgagcaggccgcgcataccgcggacagtggccacgtcgacctg
ttcgggagcatgttcgacgaggcggatgtggacgtctacgccaaccatcgcaaggtacgc
gagctgacactcaaagagcgcctcaagggtgaaaaggacacccttggcctgtacctgacc
ggtcaccctatagacgaatacgaaaccgagatccgtcgcttcgcccgccagcgtatcgtc
gacctgaagccggcgcgcgacacccaaaccattgccggcatgatcattgccctgcgggtg
atgaagaacaagaaaggcgacaagatgggcttcgtcacgctcgacgaccgctccgggcgt
atcgaggcctcgctgttcgccgacgccttcatggccgcccaggccctgttgcagaccgac
gccatggtggtggtggagggggaggtcagcaacgacgacttctccggtggcctgcgcctg
cgggtcaagacggtgatgaccatggaggatgcacgcaccaagctggccgagagcctgcgc
ctgaagctcagccacgaggcactcaagggtgaccgcctcagctggctgggcgagctgatc
aaccgccatcgcggtggctgcccgatcaccctggagtacaccggcagcgatgccaaggcc
atgctgcagttcggcgaccagtggtccatcgacccggccgacggcctgattcaggcactg
cgtgaccagttcgggcgtgagaacgtcttcctgcaataccgttga
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integrated database retrieval system
