Pseudomonas entomophila: PSEEN5042
Help
Entry
PSEEN5042 CDS
T00362
Name
(GenBank) ATP-dependent RNA helicase RhlE, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pen
Pseudomonas entomophila
Pathway
pen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSEEN5042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pen03019
]
PSEEN5042
Enzymes [BR:
pen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSEEN5042
Messenger RNA biogenesis [BR:
pen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSEEN5042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAK17675
UniProt:
Q1I3W1
LinkDB
All DBs
Position
5352124..5354028
Genome browser
AA seq
634 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQKIPDGDLMGFDASTVEAEKPEVRERQQNNGRGGRNQQPRGEGGKEGSGGR
KDKGKDKGKQKPAAEKQADKEKSGDKQQQGQQRKPRDKKPRQQQASQGQKATPSAPADRD
PEEFLDDDVDNFGNRADYVSPYQNAKNQGRNRRPGGNAGQGQGNGQRSGGGQGQGQGRGN
SQQRQGQNQGSGEKRARSGGGSNGGARRDNNGGRNRRDDTARQEPAVRNPREPQNTPVII
RKESKLDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcccagacaggtactggtaaaaccggcggcttcgcgcttccgattctc
gagcgcctgttcccaggtggccaccccgacaagtcgcaacgccatggcccgcgccagccg
cgcgtgctggtgctcacgccaacccgcgagctggcagcccaagtgcacgacagcttcaag
gtctatgcccgcgacctgaatttcatcagtgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggccaagggcgtcgacgtgctggtcgcctgcccaggccgcctg
ctcgacctggccggccaaggcagcgtcgacctctcccgcgtcgagatcctggtcctggac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtcaagaaagtgctcgcgcgc
ctgccagccaagcgccagaacctgctgttctcggccaccttctccaaagacatcaccgac
ctggccgacaagctgctgcacaaccccgagcgtatcgaggtcacgccgccgaacaccacg
gtcgagcgtatcgagcagcgcgtctatcgcctgccggccagccacaagcgtgcgctgctg
gcgcacctgatcaccctgggtgcctgggaacaggtgctggtgttcactcgcaccaagcat
ggcgccaaccgcctggccgagtatctggagaagcacggcctgaccgccgccgcgatccac
ggcaacaagagtcagaacgcgcgcaccaaggccctggccgacttcaaggccaacaccgtg
cgtgtgctggtcgccaccgatatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaacttcgaactgcccaacgtcgaggaagactatgtgcaccgcattggccgtacc
ggccgtgccggtcgctcgggcgaggccatctcgatggtcgcgccggacgaagagaagcta
ctcaagagcatcgagcgcgtcaccaagcagaagatccccgatggcgatctgatgggcttt
gacgcatcgaccgtcgaggcggagaagccggaagtccgcgaacgccagcagaacaacggc
cgcggaggccgcaaccagcaacctcgcggcgaaggcggcaaggaaggcagtggcgggcgc
aaggacaagggcaaggacaaaggcaagcagaagcctgccgccgagaagcaggccgacaag
gaaaagtccggcgacaagcagcagcaaggccagcaacgcaagccgcgtgacaagaagccg
cgccagcagcaagcttcccagggccagaaagcaacgccatcggcacctgccgaccgtgat
ccggaagagtttctggacgacgatgtcgacaatttcggtaaccgcgccgactacgtcagc
ccctaccagaacgccaagaaccagggccgcaaccgccgcccgggcggcaatgccgggcag
ggtcagggcaacggtcagcgtagcggcggtggtcaaggtcagggtcaaggccgtggcaac
agccagcagcgtcagggccagaaccagggctccggcgaaaaacgcgcccgcagtggcggt
ggcagtaacggtggtgctcgtcgcgacaacaacggcggccgcaaccgccgcgacgacacc
gcgcgccaggagccggcggtgcgcaacccgcgcgagccgcagaacaccccggtgatcatc
cgcaaggaatccaagctcgaccgttatccgacgcccgagcaattggacgacctgccaagc
cgcccacggggtgagcgcccggcgctgttgacccgcaagggttga
DBGET
integrated database retrieval system
