Porphyromonas endodontalis: LA319_02040
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Entry
LA319_02040 CDS
T08002
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pend
Porphyromonas endodontalis
Pathway
pend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA319_02040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pend03019
]
LA319_02040
03009 Ribosome biogenesis [BR:
pend03009
]
LA319_02040
Enzymes [BR:
pend01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA319_02040
Messenger RNA biogenesis [BR:
pend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA319_02040
Ribosome biogenesis [BR:
pend03009
]
Prokaryotic type
rRNA helicases
LA319_02040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBH64979
LinkDB
All DBs
Position
complement(490132..491895)
Genome browser
AA seq
587 aa
AA seq
DB search
MTFDELKLSAPLLDAVSALGFTEAMPVQAAVIPYLLEDNIDLIALAQTGTGKTAAYGLPL
LEKLRPQRDFPQALVLSPTRELCLQIASDLESFAKFLPEVHVLAVYGGSSIETQIRSLKR
GVDIVVATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEERNLL
LFSATMSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPARQRYLALKRIVDFFP
SIYGIVFCRTRVETKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQLLVATDV
AARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSIALCHLREKSRIRSIEKLI
GAKMEVGTLPSGREICSKHLFHLADRLEHVDSSAHAEEIAAILPEVSQKLSWLDRDELLR
RLMTLEFERFFAYYSTAEEIEPESLKRETKEEKRERRNSAPRVVEEGMTRLFINFGKTDR
LFPNKLIELINRCVPGRVRIGKIDLMQKFSFFEVDSHDAHRLIEELSQYEVEGRRIIVDY
ADAADGSDSKRETARGRKDSAPREKHFRKDKAPRKPLPKPKEKRKRR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgacgaactcaaacttagtgcacccctgctggatgcagttagtgccttggga
tttacagaggcgatgcctgttcaggctgccgtaatcccctatctattagaagataacata
gaccttatagcgttggcgcagacgggtacgggcaaaacagccgcttacggtttacccctt
ttggagaagctccgtccccaacgcgatttcccccaagcattagtcctttctcccacgcga
gagctttgtttgcagattgcaagcgatttggagtcttttgccaaatttctaccggaggta
catgttttggcggtctacggaggtagctccatagagacgcagatacgctccctcaagcgt
ggtgtagacattgtggtagccacccccgggcgtttgctcgacttgatgcgccgccgtgct
atctctcttgaaaggatccatacggtagtgctcgatgaggcagatgagatgctcaatatg
ggctttagcgaagatcttaaagccatcctttcggagatccccgaagagcgtaatttgctc
cttttctcggctacgatgtcgcgagagatcgctaccattgcacacagttatctacacgat
cccaaagagataacgattgggcgtaagaacgaagccaacagcaatattcgccatatctac
taccttgtgccggctcggcaacgctatcttgctctcaaacggatcgtcgatttcttcccc
tctatttacgggattgtcttctgccgtacgcgtgtggagaccaaggaaatagccgagcac
ctgattgccgatggttataatgccgatgcgcttcacggggatttgagtcaggagcagcgc
gatcgtgtaatgcaacgcttctgtagtgggcacttgcaattgcttgtcgctaccgatgtg
gcagcccgagggttggatgtggataacctaacgcacgtgattcactatggcctccccgac
gacgtggagaactatacgcaccgctcggggcgtacggctcgtgccggcaaaaccgggctt
tctatcgccctttgtcacctgagggagaagagccgcattcgtagcattgagaaactaatt
ggtgccaaaatggaggtcggcacactgccctccgggcgcgagatttgtagcaagcatctc
ttccaccttgccgatagattggagcatgtagactctagcgctcatgccgaagagattgcc
gctatcttgccggaagtgagtcaaaaactctcgtggctcgaccgcgacgaactgctccgc
cgcctcatgacgctggagtttgagcgtttcttcgcctactatagcaccgcagaagagatc
gaacccgagagtctgaagcgcgagacaaaagaagagaaacgcgagaggcggaatagtgcg
cctcgtgtggtagaggagggtatgacgcgtctctttatcaactttggcaagacggatcgc
ctcttcccgaataaacttatcgagctgatcaatcgctgtgtgccggggcgagtgcgcatt
ggcaagattgacctgatgcaaaaattttctttcttcgaagtggatagccacgatgcccat
cgtctgatcgaagagctctctcaatacgaagtggaggggcggcgcattattgtcgattat
gccgacgctgcggatggctccgactccaagagggaaaccgctcgtgggaggaaagactcc
gcccctcgggagaaacacttccgcaaagacaaagctccgcgtaagcctttgcccaaacct
aaagaaaagaggaagagacgatag
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