Porphyromonas endodontalis: LA319_02290
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Entry
LA319_02290 CDS
T08002
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pend
Porphyromonas endodontalis
Pathway
pend03410
Base excision repair
pend03430
Mismatch repair
pend03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LA319_02290 (recJ)
03430 Mismatch repair
LA319_02290 (recJ)
03440 Homologous recombination
LA319_02290 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pend03400
]
LA319_02290 (recJ)
DNA repair and recombination proteins [BR:
pend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LA319_02290 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LA319_02290 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA319_02290 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Toprim
DSPc
Motif
Other DBs
NCBI-ProteinID:
UBH65029
LinkDB
All DBs
Position
complement(558195..559940)
Genome browser
AA seq
581 aa
AA seq
DB search
MTNKWIWKPLTDEEISTSNELIAELKLAPVVGRLLVKRGIRTADEARHFFSPKLEDLHDP
FLMKDMDKAVERINKALGKKENILVYGDYDVDGTTAVSLVYKFLRQSGCSDHQLHYYIPD
RNDDGYGVSKQGIDRAHELGVKLIIVLDCGIKAIEEIAYAKSLGIDFIVCDHHTPDGVLP
DAVAVLDPKRADNTYPFEELSGCGIGFKLMQAFAINNNIRMRRLYSLLDLVAVSIASDVV
STLGENRILAYFGLQQLNRNPSPGLRGIINICNLANEEIDMSSIVFKIGPMINASGRMMD
GKKTVDLLISRDIEEAEEKCLEIVQYNEQRRELDKQITREAVRFVEEFKPHKKYKIIVIH
KPQWHKGVIGIVASRLAEQYARPVVVLSGEGDKVSGSARSYGGFDMYHAIEHCRDLLTNF
GGHPYAAGLTLSEDKVEEFTERIQHYAEENVYAKQFNPEIEIDAVLSLVEITKSLHKNLQ
KMGPFGPDNPKPIFMTRFLFDTGTSKAVGKNGEHIKLEMTDSPQMFQVKSGIAYGLSSHI
SYIKSYRPFSICYTVEENDYYGTSSIQILVKDIKHEDNFSA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacaaatggatttggaagcctctaacagacgaagagatttctaccagcaacgaa
ctcattgcggagctaaagttagctcccgtagtggggcggctgctggttaagcgtggtatt
agaactgccgacgaagcgcgtcatttcttctctcccaagctcgaagacctccacgatccc
ttcttgatgaaggatatggataaagccgtggagcgcatcaataaggcgttgggtaagaag
gagaatatcctagtatatggcgattacgacgtagatggcactacggcggtttccttggtg
tataaatttttgcgccaatcgggctgtagcgatcatcagttgcattactatatcccggat
cgcaacgacgatggttacggggtctcgaagcaggggatcgaccgcgcccacgagttgggg
gttaagcttattattgtactcgattgtggcatcaaggcgattgaggagatcgcttatgct
aagtctttagggattgattttatcgtatgcgaccaccatacgccggatggggtgttgccc
gatgctgtggcggtactcgaccccaagcgggcggataatacctacccttttgaggagctt
tcggggtgtggtattggcttcaaacttatgcaagcctttgctattaacaacaacattcgc
atgcgtcgtctctattcattgcttgatttggtagccgtgagcattgcgagcgatgtggtc
tccacattgggagaaaaccgcatattggcgtattttggcttgcagcaactcaatcgtaat
ccgtcgccgggcttgaggggtattatcaatatctgcaacttggcaaatgaggagattgat
atgagtagtatcgtctttaagattggccccatgatcaatgcttcggggcgtatgatggac
ggcaaaaaaacggtcgatctgcttatcagtcgggatatagaggaggcagaagagaagtgc
cttgagattgtacagtacaacgagcagcggcgtgagcttgataagcaaattacccgagag
gccgtgcgctttgtggaggagtttaagccccataagaagtacaaaatcatagtgattcac
aagccacaatggcacaaaggggtgattggcattgtagcctctcgcctggctgagcagtat
gctcgtcctgtggtggttttgagcggagaaggggacaaagtctctggttctgcgcgtagc
tatggaggctttgatatgtaccatgccatagagcattgccgtgatctcctgaccaacttt
ggggggcacccctatgctgccgggctcactttgagcgaggataaggtggaggaatttacc
gagcgcatccagcactatgccgaggagaacgtgtacgccaagcagtttaatccggaaatc
gaaattgatgccgtgctgagccttgtggaaataacgaagagtttgcacaaaaacttgcag
aaaatgggtccctttggtcccgataatcccaagcctatctttatgacacgtttcctcttc
gataccggtacaagtaaggctgtgggcaagaatggagagcatatcaagctggagatgacg
gactctccacagatgttccaagtcaaaagcggtattgcttacgggctttcttcgcatata
tcctacatcaagagttaccgacccttttctatctgttatacggtggaggaaaacgattat
tatggcacttcatcgatacaaatactggtcaaggatatcaagcatgaggacaatttctct
gcatag
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