Porphyromonas endodontalis: LA319_03435
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Entry
LA319_03435 CDS
T08002
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pend
Porphyromonas endodontalis
Pathway
pend03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA319_03435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pend03021
]
LA319_03435 (rpoC)
03400 DNA repair and recombination proteins [BR:
pend03400
]
LA319_03435 (rpoC)
Enzymes [BR:
pend01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA319_03435 (rpoC)
Transcription machinery [BR:
pend03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA319_03435 (rpoC)
DNA repair and recombination proteins [BR:
pend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA319_03435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
RnfC_N
Apocytochr_F_C
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
UBH65240
LinkDB
All DBs
Position
810931..815382
Genome browser
AA seq
1483 aa
AA seq
DB search
MAFRKDNKLKTNFSKIRVSLASPEQILENSYGEVTKHETVSYRTLKPERDGLYCERIFGP
VKDYECHCGKYKGNKYRGITCDRCGVEVTQKMVRRERMGHIALKVPVVHVWYSRSIPNKI
AYLLGFSSKELESIIYYDRYVVIQPGVFAVPEGEAPESHPVNSQECPKYLEAKQLLKNEH
YEQFCDRIYEDFPGNDSLENSDPNKFIAKSGAEAIYDLLANIDLDALADDLRNIAQTATS
QQKKAEALKRLPVVEAFRASAGINRPEWMVLKVIPVIPPDLRPLMPLDGGRFATSDLNDL
YIRVITRNNRLGRMIEANAPEVIMRNEKRMLQEAVDALFDNSRKTSALKSDQGRALKSLS
DSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELKMNECGLPKDMAAELYKPFVMRKLIER
GIVKTEKSAKKIVDRRDPVIWEIVENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQ
LPPLSCAAFNADFDGDQMAVHLPLGNEAIAEAQLLMLASHNILNPASGEPITVPSQDMVL
GLYYISKFRSLTPQEQELEQQVIDKKRIPSIFYSAQEAYIAYDNGRIDIHKPIKVMVPNA
RIVDGEPQRDVVETSVGRLMFNDLVPNEVGYINELLGKKSLKRIIKDVLKVCGVARTAQF
LDDIKNLGYRMAFLGGLSFNLQDVLIPAEKKRIITEATAEADSIIEQNRMGEIDNQTRYN
KVVAIWNEATDLLSNLVMEGFKKDNDGFNSIYMMLDSGARGSKEQIRQLAGLRGLMAKPQ
KSGSEGGAVIENPITSNFLEGLSVQEYFISTHGARKGLADTALKTADAGYLTRRLVDVSH
DVIINEEDCGTLRGIEVSAVVDESDNEVASLESRIIGRTSVQDIYNTNDYTDPNRKLIVA
AGEEIREQEAEQIKAANIKSVEIRSVLTCDSRYGVCAKCYGRNLATHRPVQIGEVVGVIA
AQSIGEPGTQLTLRTFHAGGVAGSENTNRSIVVKEEEAIVELSLDLRAIEIPGQDYRVIA
SRESEIFLYHPESHNLLKTYDLQYGSKLHCKTGDKVVKGQTLAEWDPFNSVVVAETAGTL
EYVNLEEGVNYKDTVDATSGYHDVMVIESKEKSKLPELKIIDPATGTEKLYSLPAGCRLT
FNPKTKGKMQVNPGDELYKIPRVLASAGDITGGLPRVTELFEARNPSNPAILSEIDGVVE
IGKIKRNNREVSVTSRLGEVRKYLIPTAKHILVQNGDVVRAGTPLSDGAVTPSDILAIKG
PTALQEYIVNEIQGVYRKQNVGINDKHFEVIVRQMMRKVEIMEPGDSLFLEKQMVDKQDV
QEENDRLWGMNVVEDAGDSEKYRAGALIPASAVRDENSSLQRRDLTPMRVREAVPATSRQ
VLQGITRAALQTKSFMSAASFQETTKVLNEAAINAKVDDLLGLKENVICGHLIPAGTGLR
AFNGMVVMRREDYERAKAAREETGHDPEFVEEVAAEAATETAE
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaggataataagttaaagacaaacttctccaagatcagagtgtcattg
gcatctcctgagcagattctggagaactcttatggggaagtcacaaagcacgaaacggta
agttaccgcacgctcaaacccgagcgtgatgggctttactgtgagcgtatctttggtccg
gtaaaagattacgaatgccattgtggtaagtacaaaggcaataagtatcgtggaattacg
tgcgaccgatgcggtgttgaggtgacccaaaagatggttcgccgcgagcgtatggggcac
attgccctcaaggtgcctgtggtacatgtttggtactctcgctccatccccaataaaatt
gcatatctactagggttctcttccaaggagcttgagtctatcatttactacgatcgttac
gtggtaatacagcccggtgtctttgcagttcctgaaggagaggctcccgagtctcacccc
gttaattcgcaagaatgccccaagtatctagaagcaaagcagcttctaaagaatgaacat
tacgagcaattctgcgatcgtatttacgaagacttcccaggcaatgacagcttggagaac
tcagatccaaataagtttatcgcaaagtcgggtgccgaggctatctacgatttgctggcc
aacatcgacctagatgctcttgcagacgacttgcgcaacatagcacaaacggctacttct
cagcagaagaaagctgaggctcttaagcgtcttcccgtggtggaagccttccgcgcttcg
gcaggaattaaccgcccggagtggatggtgcttaaggtaatccccgtaattcctcccgat
cttcgtcctcttatgcctttggatggagggcgttttgccacctcggatctcaacgacctt
tacatccgtgtcatcacgcgaaataaccgtttgggacgtatgattgaggcgaatgcaccc
gaagtgatcatgcgaaacgaaaagcgtatgttgcaggaggctgtggatgctttgttcgat
aattcgcgcaaaaccagcgctctcaagagtgatcagggacgtgctctcaaatcgctctca
gatagccttaagggtaagcaagggcgtttccgtcaaaaccttctcggtaagcgtgtagac
tattctgcgcgttcggttattgtcgtaggccctgagctgaagatgaacgaatgcggtctg
cctaaggatatggcagccgagctttacaagccgtttgtgatgcgcaagcttatcgagcgt
ggtattgtaaagacagaaaaaagtgcgaaaaagattgtagatcgtcgtgatcccgttatt
tgggagattgtcgaaaatgtaatcaaagggcatcctgttcttcttaaccgtgctccgacg
cttcaccgtcttggtatccaagctttccaacccaagctgattgagggtaaggctattcag
ctacctcctctctcgtgtgccgccttcaatgccgactttgacggcgaccagatggctgtt
cacctccccttgggtaatgaagctattgccgaagctcagctcctaatgttggcttcacat
aatatcctgaatcctgctagtggtgagcctattaccgtgccttcgcaagacatggtgctc
gggctttactacatctctaagttccgcagcttgactcctcaagagcaagagcttgagcag
caggttattgacaagaaacgtatcccctccattttctatagtgcacaagaggcctatatc
gcttacgacaatgggcgtatagatatccataagcccattaaggtaatggtgcccaatgca
agaattgtggatggagagcctcaacgtgatgttgtagagacctcggttgggcgacttatg
ttcaacgaccttgtccccaatgaggttggttatatcaacgaactcctcgggaagaagtct
ctcaagaggatcattaaagatgtgctcaaggtctgcggagttgctcgcacagctcagttc
cttgacgacataaagaacctcggttatcgtatggcgttccttggcggtctttcctttaac
ctccaggatgtgcttatccctgccgagaagaagagaattatcacagaggctacggctgag
gcagatagtattatcgaacagaaccgtatgggggaaatcgataatcagacgcgctacaac
aaagtcgtggctatctggaatgaagccaccgatctcctctctaatttggtgatggagggc
ttcaaaaaagacaacgacggcttcaatagtatttacatgatgcttgactccggagcccgt
ggttctaaggagcagatccgtcagttggctgggcttcgtggtcttatggctaagcctcag
aagagtggtagcgaaggtggggctgttattgagaaccctattacttcgaacttcctcgaa
ggactttctgtacaagagtactttatctctacccacggtgctcgtaagggtcttgcggat
acggctcttaagactgccgatgccggttaccttactcgtcgtttggtggatgtatctcat
gatgtgatcattaacgaagaagattgtggtaccctccgtggtatcgaagtctctgccgtg
gtagacgaaagcgacaacgaagtggcttctctcgagtctcgcatcattgggcgtacttct
gtacaagatatctataatacgaacgattatacagaccccaaccgcaagcttattgtggct
gccggtgaagagatccgcgaacaagaggctgagcaaatcaaggctgccaacatcaagagt
gttgagattcgctcggtattgacgtgcgactcgcgctatggcgtttgtgcaaagtgctac
ggtcgcaatctcgctacgcaccgtcccgttcagattggggaggtcgtaggggtaattgca
gctcagtccatcggtgaacccggtacacagttgaccctccgtacattccatgcgggaggg
gttgcaggtagcgaaaatacgaaccgttcgattgtggttaaggaagaagaggctatcgta
gaattgagtctggacctccgtgcgattgagatccctggacaagactatcgtgtgattgcc
agccgagagtcagaaatcttcctctatcatcccgagtcgcacaaccttttgaagacctac
gacctccagtatggatcgaagcttcattgcaagaccggcgataaggtagtaaaggggcaa
acccttgctgagtgggatcctttcaactccgtagtagtggcagaaactgccggtaccctc
gagtatgtaaacctcgaagagggcgttaactacaaggatacggtcgatgctacttcgggt
taccacgacgtgatggttattgagtccaaggaaaagagcaaactccccgagttaaagatc
atcgatcctgccacaggtacagaaaaactttactctctccctgccggctgtcgtcttacc
ttcaatcctaagactaagggtaagatgcaggtgaatccgggtgatgagctctacaagata
cctcgtgtgctggcaagtgccggcgacatcacgggaggtcttccccgagtaacggagcta
tttgaggctcgtaatccgtctaatcctgctatcctttccgaaattgatggtgtggtagag
attggtaagatcaagcgtaacaaccgcgaagtctcagttacaagccgtttgggagaagtc
cgtaaatatcttatccctacagcaaagcatatcttggtacagaatggcgacgtagtacgt
gccggtacccctctctctgatggggcggtaacaccgagtgacattctcgcgatcaagggg
ccgacggctctccaagagtacatagtaaacgagatccaaggcgtatatcgtaagcagaac
gtaggtattaacgataagcacttcgaagtaattgtgcgtcagatgatgcgtaaggtcgaa
atcatggagccgggcgactctctcttcctcgagaagcagatggtcgataagcaggacgtc
caagaagagaacgaccgcctctggggtatgaatgtggtagaagatgccggtgattcggag
aaatatcgtgcaggagctcttatccctgcctctgctgttcgagacgaaaatagttcgctc
caacgccgtgatttgacgccgatgcgcgtacgcgaagctgtgcctgcgaccagtcgccaa
gtactccaaggtatcacacgtgctgccctgcagacgaagagctttatgtctgcggcttca
ttccaggagaccacaaaggtactcaatgaggctgccatcaatgccaaggtagacgatttg
ctcggtctcaaagaaaacgtaatctgcggtcatcttatccctgcaggtaccggtttgcgg
gcgtttaatggcatggtggtaatgcgccgtgaagactatgaacgcgctaaggctgctcga
gaagaaaccgggcatgaccccgagttcgtagaagaggtagctgctgaggctgctactgag
acggctgagtaa
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integrated database retrieval system
