Porphyromonas endodontalis: LA319_05825
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Entry
LA319_05825 CDS
T08002
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pend
Porphyromonas endodontalis
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pend03032
]
LA319_05825 (topA)
03400 DNA repair and recombination proteins [BR:
pend03400
]
LA319_05825 (topA)
Enzymes [BR:
pend01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LA319_05825 (topA)
DNA replication proteins [BR:
pend03032
]
Prokaryotic type
DNA Topoisomerases
LA319_05825 (topA)
DNA repair and recombination proteins [BR:
pend03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LA319_05825 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_3
MarR_2
SMC_hinge
M157
Motif
Other DBs
NCBI-ProteinID:
UBH64064
LinkDB
All DBs
Position
complement(1369189..1371555)
Genome browser
AA seq
788 aa
AA seq
DB search
MQKTPNLVIVESPAKAKTIEKFLGKGFRVLSSYGHIRDLKKSGLGIDISQQFAPNYIVSK
DKLAVVRDLKHAADNAEMVWLASDEDREGEAIAWHLYEVLERAGKPTKRIVFHEITQQAI
DYAIAHPRDIDLNLVDAQQARRVLDRIVGFELSPILWKRIKPALSAGRVQSVAVRLIVDR
EREIQQFSPSSSYKVIASLCKQTEGETLQAIAEKTFDTAEEAKNFLSRNSAQEMEVLSLV
SKPGKRSPAAPFTTSTLQQEAARKLGYTVGTTMRIAQKLYESGHITYMRTDSVNLSTLAL
NSAAKAIKERWGESYYQLRKYKTKSKGAQEAHEAIRPTDLSKESISGTPQEQKLYEMIHK
RTLASQMADVVLEKTTATFRGQTSNDVFVAEGEVIRFEGFLKAYDYASHSDEEEEKNNSH
QLPTLSKGELLNTQELVATEHITRAPARYSEASLVRRLEELGIGRPSTYAPTIQVIQARE
YVQKGTGNGTEHQYHDYICNAQHPTPTLKIRTEKIGADKGKLLPTDIGIVVNDFLVENFP
KVIDYNFTAQVEGLFDRIAEGKEIWTNTMEHFYTLFHPMVETALESFDNHARGERLLGVD
PSTNKAVMARIGRYGPLVQIGENTPTEKASFASLREGQSIQTITLEEALDLFKLPRTPGQ
FEGNDVKVASGRFGPYIQHAGKFTSIPKQYDPLSITLDECIALIQAKREEEIKAELKRFS
EDPELTIRTGRFGPFLKHGKENYKLSKEQKERAAELTYEECLNIMKDGHPSGTRKGSTSK
RTATKSKK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagacccctaacctcgtgattgtcgaatcacctgccaaagctaagacgatagag
aaatttcttgggaaaggcttccgagtactctcaagctacggacatattcgcgacttaaaa
aagagtggattaggtatagatatttcccaacaattcgcccccaactacattgtaagtaag
gataaacttgctgtagtacgagacctaaaacacgcagccgacaatgccgagatggtatgg
ttagcatccgatgaagaccgcgagggagaggctatcgcttggcatctgtatgaggtgcta
gaacgtgcagggaaaccaacaaaaaggattgttttccacgaaataacacagcaagcaata
gactatgctattgcccatcctcgggatattgacctcaaccttgtagatgcccaacaagcc
cgccgcgtacttgaccgcatcgtaggatttgagctttctcccatcctatggaagcgtatc
aaaccggctctctcagcaggacgtgtacagtcggtagccgtccgtctcatagtggataga
gagcgagagattcagcaattcagtccttcttcttcgtataaagttatagcgtctctttgc
aaacaaacggaaggggaaaccctgcaagccattgcagaaaaaacatttgataccgcggaa
gaagccaagaatttcctaagccgtaacagcgctcaagagatggaggtactgagtctcgtg
agtaaacccgggaaacgctctcctgcggccccctttaccacctctaccctgcaacaagag
gctgctcgaaaactagggtacaccgtggggacaaccatgcgtatagcccaaaaactctat
gaatcggggcacattacctatatgcgaacggactccgttaacctctccacgttggcactc
aatagtgctgccaaagccataaaagagcgatggggcgagagctactaccaactacggaag
tacaagacaaagagtaagggagcacaagaggcacacgaagctatccgccctactgatcta
agcaaagagagtatctcaggtactccccaagagcaaaaactctacgaaatgatccataaa
cgaaccctagcctcccagatggcagatgtcgttttggagaagacaacggcaacctttagg
ggtcagacctctaacgacgttttcgtagcagagggggaggtgatccgcttcgagggattt
ctcaaagcctacgactatgcctctcatagcgacgaagaggaagaaaagaataattcccat
caactcccgactcttagtaagggagaattgctcaacacccaagagctcgttgctacagag
catataacacgtgctccggctcgttactcagaggcctctctcgtacgtcgactagaagag
cttggcatcggtcgaccctctacttatgcccccacaatacaagttatacaagctagagag
tacgtacaaaaagggaccggtaatggcaccgaacatcagtatcacgactatatctgcaac
gcccagcatccaacacctactctcaagatacgtacggagaaaataggagccgataagggc
aaacttctccccacagacatcgggattgtggtgaatgattttcttgtagagaacttccca
aaggttatcgattacaactttacggctcaagtagaagggctcttcgacagaatagccgaa
gggaaagagatttggaccaacaccatggaacatttctacactctcttccatcccatggtg
gagacggctctagaatcttttgacaatcacgctagaggagaaaggcttttaggcgttgat
ccctccacaaataaggctgtaatggcgcgtattggccgttatggtcctttggtacaaata
ggcgagaacacgcctaccgaaaaagctagctttgcatcactacgggaggggcagtccatc
caaaccattacgctggaggaggctctagacctcttcaaactacctcgtaccccagggcaa
tttgaggggaatgacgtaaaagtggcttcgggtcgcttcggtccctacattcaacatgcc
ggcaagtttacctctatccctaagcaatacgatcccctttccatcaccctagatgagtgt
atagcactcatacaggcgaagcgtgaagaggagataaaagctgagctaaagaggttctct
gaggatccggaactcaccatacgtacgggacgttttggtcctttcctcaaacatggaaag
gaaaactataaactaagcaaagagcaaaaagagcgggcagccgaacttacttacgaagag
tgcctcaatattatgaaggatggtcatccatcaggtactcgcaaaggttcgaccagcaaa
cgaacggctaccaagtccaaaaagtag
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