Porphyromonas endodontalis: LA319_07125
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Entry
LA319_07125 CDS
T08002
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pend
Porphyromonas endodontalis
Pathway
pend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA319_07125 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pend03019
]
LA319_07125 (recQ)
03400 DNA repair and recombination proteins [BR:
pend03400
]
LA319_07125 (recQ)
Enzymes [BR:
pend01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA319_07125 (recQ)
Messenger RNA biogenesis [BR:
pend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA319_07125 (recQ)
DNA repair and recombination proteins [BR:
pend03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LA319_07125 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
zf-CXXC
SNF2-rel_dom
HHH
Motif
Other DBs
NCBI-ProteinID:
UBH64301
LinkDB
All DBs
Position
1692103..1694277
Genome browser
AA seq
724 aa
AA seq
DB search
MDLTLLAHLKEHFGFETFKNHQEEIICALLEGKDCFVLMPTGGGKSMCYQLPALISEGTA
IIISPLIALMKNQVDALRSYCNDDCVVHFFNSSLRKSQMDLVRQDTLAGRTKLLYVTPEC
LTKEENQAFLQSISISFFAIDEAHCISEWGHDFRPEYRKIRPMIDVIGRRPIIALTATAT
PKVEHDILRTLQIPQAHIFRSSFNRPNLFYSILPKNEDVDRNIVRFVLSNPQKSGIVYCM
SRSKVTTFAKILRINGIRALPYHAGLDAQERAANQDAFLSEECQVIVATIAFGMGIDKPD
VRFVIHYDMPKSLEGYYQETGRAGRDGGEGVCIAYYSQSDMQRLEKFMQDKSNSEREIGK
QLLAETSNYAESALCRRKLLLHYFGEEYREENCGNCDNCTMSKKKLNASEWLQSLIETVL
ALKEKFKAEYVVDVLRGVDTADTEAYGHTELECFGQGNDVDADLWQCVISQAVIGGFIDK
DVENYGILKVTAKGKKFLKKPTKFEVVIDDQDDEEDAMVGKEDASGEAGDPELFSIMKEF
RKTMALQLKVPAYVIFQDASLKAMATLYPTTEEELQNIPGVSSSKVKRYGAEFLKLIRKH
VEENEIERPIDFHVRTIPNKSKIKLTIIEQIDRKVSLEDIAFFNNLEIDELLTELEEIVY
SGTGINIDYAIKEIMDDSDVLEVYTYLKQSETDSIDAVLEEFGDVYSLEELRLIRIKFIS
EQAN
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaccctactggctcatctcaaagagcattttggcttcgagacattcaaaaat
caccaagaagagattatttgcgccctattggagggcaaagattgttttgtgttgatgcct
accggaggggggaaaagtatgtgttaccagttgcccgcccttatctctgaggggacggca
attatcatctctcctctcattgctcttatgaagaaccaagtagatgctttacgtagctac
tgtaatgacgactgtgtagtgcacttctttaattcgtctctacgcaagagtcaaatggat
cttgtgcgacaggacaccctagcggggcgaaccaaacttctctatgttacccccgagtgt
cttactaaggaggagaaccaagctttcttacaatctatttctatttccttctttgccata
gacgaagctcattgcatctctgagtggggtcatgacttccgtccggagtatcgtaaaata
cgccctatgatcgatgttataggacgccgtcccatcattgctctcacggcaacagccacc
cccaaggtggagcacgatatcctgcgaaccctacaaattcctcaagctcatatcttccga
tcttcatttaatcgacccaatcttttctacagcatactccctaaaaatgaggatgttgat
cgaaatattgttcgatttgttctctcaaatcctcaaaaaagtggcatagtctattgcatg
agtcggagcaaagtcactacttttgccaagattcttcggatcaatggtatccgtgccctt
ccttatcatgccggtttagatgctcaagagcgagccgctaatcaagatgcattccttagc
gaagagtgccaggtaattgtagcaaccatcgcctttggcatggggatagacaagcccgat
gtacgctttgtcattcactacgatatgcctaaaagtcttgagggatattatcaagagacc
ggtagagcgggacgagacggaggagagggagtatgcattgcttactacagccagagcgac
atgcaacggttggaaaagtttatgcaagacaagagcaatagtgagcgagagataggcaaa
caactgcttgcagaaacaagtaactatgccgagtccgccctatgtaggcgcaagctccta
cttcattattttggagaagaatacagagaggagaattgtggaaattgtgacaattgtacg
atgtcaaaaaagaaattaaacgcaagtgagtggttacaatctctcatagagacggtactc
gcactcaaagaaaaattcaaagcagaatacgtagtagacgtgctaagaggcgtggatact
gcggatacagaagcctatggccataccgaactagagtgctttgggcaaggaaatgatgta
gatgccgatctatggcaatgcgtcattagccaagctgtgataggaggatttatagacaag
gatgtagagaactatggtatcctgaaggtaacagcaaagggaaaaaagttcctaaagaag
cccaccaaattcgaggtcgtaattgatgatcaagacgatgaagaggatgccatggtaggt
aaagaggatgcttccggagaggcaggagaccccgagcttttctctatcatgaaagaattt
cgtaagacgatggctctacaactaaaggtgccggcttacgtgatcttccaagatgcctct
ctcaaggctatggctacactctaccccaccaccgaggaggaattacagaacattcccgga
gtaagttcgagtaaggtaaagcgctacggagccgaattcctcaagctcattcgcaaacat
gtggaggagaatgaaatagaacgccccatagacttccatgtacgtactatccccaacaag
tctaagatcaagctcaccattatcgaacagatcgaccgcaaggtatcgctcgaagatatc
gctttcttcaacaatttagagattgatgagctcctcaccgaattggaagaaatcgtatac
tctggcacgggcatcaatatcgactatgccatcaaagagataatggatgatagtgatgtt
ttggaggtatatacctacctcaagcaatcagagacggactccatagatgctgttctcgaa
gagtttggggatgtctattccctagaggagctacgtcttattcgcatcaaattcatatcc
gagcaagccaattaa
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