Porphyromonas endodontalis: LA319_07175
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Entry
LA319_07175 CDS
T08002
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pend
Porphyromonas endodontalis
Pathway
pend03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pend00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA319_07175 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pend03021
]
LA319_07175 (rho)
03019 Messenger RNA biogenesis [BR:
pend03019
]
LA319_07175 (rho)
Transcription machinery [BR:
pend03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LA319_07175 (rho)
Messenger RNA biogenesis [BR:
pend03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LA319_07175 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
Rho_N
AAA_25
AAA_22
AAA
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
UBH64311
LinkDB
All DBs
Position
1705353..1707302
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AA seq
649 aa
AA seq
DB search
MQTKYTIVSLDGKTDEELRAIAQELGMKDTPSGRDKLIYAILDFQAELQAEVGKEQGKSK
ADRGNSKRPDTGNTNTTEGKSSSQSKEKDRSNTPKGAERASTNSSSSPKQKSLFSPDMDD
EARKKAIEAASAESASHLTGNIKTESSSIHPALLSSSSIPEEIASTIKNEDTYPKGAAAI
LPDTPAAKESQESNSPNKPTQMVFTNVNAKDSLLDSIMPLITPTKGTNGEKPAAPQERKG
QKNAEKSNRNQQNRQDKAGKTESHGEEETPLYNFEGMLPCIGVLEVMPDGYGFLRSADYN
YLSSPDDIYLSQQQIKTYGLKSGDVVEGTIYPPQDGEKYFPFASLEKVNGKLPSEILDRV
PFDHLTPLFPEEKFKLESLDVAGVFDKTAMRIVDLFCPIGKGQRGLIVSQPKTGKTMLLK
DIANAIAANHPEVYEIILLIDERPEEVTDMARNVNAEVIASTFDEPAERHVKIAEIVLSK
AKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIEH
GGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRRIANKRLFPAMDIMSSSTRRDD
LLLDPVTLNRMWILRKYLSDMNPIEAMEFVKQRIESTDSNLEFLASMNS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaagtacactattgtatctcttgatggcaaaacagacgaagagctgcgcgct
atcgcccaagaattagggatgaaagacaccccctcgggcagagataaactcatttatgcc
attctagacttccaggcagaactccaggcagaagttggaaaagaacaaggaaaatctaaa
gcagaccggggtaactctaagcgtcccgatacaggcaatacaaatacaacagaggggaag
tcctcttctcaatctaaggagaaagatcgctccaatacccccaagggggcagaaagggcc
tctacaaatagctcctcttctcccaagcagaagagtctcttctctccggacatggacgac
gaagcgcggaaaaaagccatcgaagctgcctcagccgagagcgcaagtcatctaacagga
aatattaagacggaaagctcctcaatccatccggctttactctcttccagctccatcccg
gaagaaatagcttcaaccatcaaaaacgaagatacataccccaagggggcggcagccatc
ctccccgacactccggcagccaaagagtctcaagagtcgaattctccgaataaacccact
caaatggtattcaccaatgttaatgccaaagactccctcctcgactctattatgccgcta
attacccctacaaagggtacaaatggagagaagcctgcagcaccccaggagcgtaaggga
cagaaaaatgcagaaaagagcaatcgtaatcagcaaaatcgccaagataaagcgggaaaa
acagagagccacggcgaagaagaaacccctctatacaatttcgaaggtatgcttccttgc
attggagtgctggaggttatgcctgatggatacggcttcttgcgtagtgccgattacaac
tacctctcctcgccggatgacatatacctctcacaacagcagatcaagacctatgggtta
aaatcgggagatgtggtagagggaaccatctatcctcctcaagatggagagaaatatttc
ccctttgcttctcttgagaaggtgaatgggaagctcccgtcggagattttagacagagtg
ccgtttgaccacctgactccgcttttccccgaagaaaaattcaagctcgaaagtcttgat
gtggcaggcgtattcgataaaacagccatgcgcattgtagatctattctgccctattggg
aagggacaacgtgggcttatcgtatcccagcctaagacgggtaagacaatgcttctaaag
gacattgccaatgccattgcagccaatcatcccgaagtctatgagatcatattgctcatt
gatgagcgccctgaagaagtgacagatatggctcgcaacgttaatgctgaggttatcgcc
tccacctttgatgagccggctgagcgtcatgtaaagattgcagaaatcgtgctaagcaag
gcaaaacgtatggtggaatgtgggcatgatgttgtaatcttactagactcaatcacgcgc
cttgcccgagcatacaatactgtgcaaccggcctccggcaaagtcctctcagggggtgtt
gatgcgaatgctctacaaaagcctaaacgattctttggtgcggctcgtaatatcgaacac
ggagggagtcttacgatactcgcaacagccctcaccgatacgggctccaagatggacgaa
gtgatcttcgaagagtttaagggaacagggaatatggagttgcaactcgacagaagaatc
gccaataaacgcctcttcccggctatggatatcatgtcgagtagcacccgccgagatgat
cttcttctcgatcctgtaaccctcaatcgcatgtggatcttgcggaagtatctatcagat
atgaatcccatcgaagctatggaattcgttaaacaacgtattgaatctacggattcgaat
cttgagttcttagcatcgatgaatagctaa
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