Pedobacter sp. PACM 27299: AQ505_07275
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Entry
AQ505_07275 CDS
T04140
Name
(GenBank) SusC/RagA family TonB-linked outer membrane protein
KO
K21573
TonB-dependent starch-binding outer membrane protein SusC
Organism
pep
Pedobacter sp. PACM 27299
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pep02000
]
AQ505_07275
Transporters [BR:
pep02000
]
Other transporters
Pores ion channels [TC:
1
]
AQ505_07275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plug
TonB_dep_Rec_b-barrel
CarbopepD_reg_2
CarboxypepD_reg
TTR_TEN1-4
Big_1
CooC_C
Invasin_D3
VID27_PH
Motif
Other DBs
NCBI-ProteinID:
ALL05309
UniProt:
A0A0P0NDW3
LinkDB
All DBs
Position
1704213..1707347
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AA seq
1044 aa
AA seq
DB search
MKEIYTMNLYLSNKWKVCTIRKVGVIILLAIGMLFSPSAYAQTIKVKGVVKDDKGVPLPG
VGVKIKGTSTGTSTNGDGLYSITVPSTSAVLVFSYIGFMPQEATVGTKTTLNISLKEDFS
DLEEIVVTGYGGVARKKDLTGASSSVNEKAIKERQPINLFDALQGQAAGVLIVNDGGGAP
GATGSIQIRGTSTLNGGNGPLYVVDGVIDENGANINPADMANIEVLKDAASASIYGSRAA
NGVILITTKRGQEGKPSIDVTYNHVFGRLAHSIPISNSAEVRAFRAIQGRTNATDSLNPS
FNADNDLQDILLGNLAQKKEVKLGISGAQKGLNYYTSLNYLDDQSIIKNSWAKRLQSRIN
IGYQISPKLKYSNNVSFGWSKGNAIPVGNTIKVVVDRPAYSLLYYPDGTLTSYIASKRNP
IAQALYERDEEEVYSAQLNNQLDYSFTKDLKFTTLFNAKLDNAQSMYFSPRIISANKDQN
SGKNEMNKTFRYEYQAFVNYNRTVATDHAFSALLGFSADRRKFDRIHTEYQNSVNEAVFV
TLPDYLTASKSYTDGTANSTASIFSRLGYNYKGRYILQGTYRRDGSSRFGSENRWGDFFS
ASAAWRFSDEKFMNFAKPYLEDAKLRYSFGQLGNDKIGDYESYTKFGFAGNYNGIGAAVP
VSNFGNPYIKWETTTQNNIGMDLSFFKGRLGITADYYVKETSNLLYPRELSKETGYSTVL
VNVGTIQSKGFEFVATGTPVVTKNFEWSIMGNITFERGTIKKLAGGIPFFVGNKWYVEEG
GKIGNFYGWKNLGVYQWNESNAYDENWKKLTLVLENGQPKIENGKPVYTSNGQPYTGNVL
SKRAPDGKLKGGDAEWEEVKADGVIDDEDRQILGNATPDFYLGVTNNFRYKNISLSFTFN
GSFGGEVYNTLLQTQNNPSNTGAGSPDMVYNSWRKPGDIAKYPYYIEKNNRGNLKTNQNS
LYVEDASFFRLSSARLSYQLNEKWSKTVGMRRISTYVYGTNLLTWTNYRGYDPEFSTNNP
LTPGDDVGKYPRRREFGLGINVNF
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaatttatactatgaacctctatttgtctaacaaatggaaagtgtgcacgatc
aggaaggttggcgtcatcattttactagccatcgggatgttattttccccctccgcgtat
gcacaaacaattaaagtaaaaggcgtagtgaaggatgataaaggggtgccgcttccaggg
gtgggcgtcaaaattaaagggacatcaacgggtacttctaccaatggcgatggcctctac
agcattaccgtacctagtacatcagcggtattggtatttagctatatcggctttatgcct
caggaagccacagtaggcactaaaactacgttaaacatcagcctgaaagaagatttctct
gatctggaagagattgtcgtaaccggttatggcggggtagccagaaagaaagaccttacc
ggtgccagttcctctgtgaatgaaaaggcaattaaagaacgtcagccaattaaccttttt
gatgctttgcaaggccaggcagcaggggttttaattgtgaatgatggtggtggtgctcca
ggtgctacaggttctatccagattcgcggtacttctactttgaatggtggaaatggacct
ttatatgtagtagatggggtgatcgacgagaacggtgcgaatatcaatcctgccgatatg
gccaatatagaagtattgaaagatgcggcatcagcttccatctatggttcacgtgcggct
aacggtgtaattttaattaccaccaaaagaggacaggaaggaaaaccttccatcgacgtg
acctataaccatgtatttggtcgtttggcacatagcattcccatcagtaattctgcggaa
gtacgtgcattcagagcgattcaaggcagaacgaatgccacagactccctgaatccaagt
ttcaatgcagataatgatttgcaggatatcttattaggtaacctggctcaaaagaaagaa
gttaaactgggaattagtggtgcccaaaaaggattgaactattataccagtttaaattac
ctggatgatcaatctatcattaagaacagctgggcaaaacgtctgcagtcgaggataaac
atcggctatcagatctccccaaaattaaagtattcgaataatgtatccttcggctggtcg
aaaggaaatgcaattccagtgggaaatacaataaaggttgtcgtagaccgacctgcttat
tccttactttactatcctgacggaactttaaccagttatattgcttcaaaaaggaatcca
attgcccaggctttatatgagcgggatgaagaagaagtgtattctgcacaattgaacaat
cagctggattattccttcacgaaagatctgaaatttacgactttatttaacgcaaaactc
gataatgcgcagagtatgtatttctccccaaggatcatctccgcaaataaagatcagaac
tctggtaaaaatgagatgaataaaacgttcagatatgaatatcaggcttttgtgaattac
aacagaaccgtggcgactgaccatgctttttctgctttgctgggttttagtgccgacaga
aggaagtttgaccgcatccatacagagtatcaaaacagtgtaaatgaagcagtttttgta
acgcttcctgattacctgacggcttctaaaagttatacagacggaacggcaaattctacg
gcttctatttttagtagattaggctacaactataaagggcgctatattttacagggaacc
tatcgtagagatggatcttccagattcggatcagaaaatcgctggggtgatttcttttct
gcctctgcagcatggcgtttctctgatgagaaattcatgaacttcgcaaaaccttacttg
gaagacgcaaagcttcgttacagttttggtcagctaggaaatgataaaatcggagattac
gagtcttataccaaattcggatttgcaggaaactataacggtattggtgctgcggtaccg
gtttcaaacttcggtaatccttatatcaaatgggaaaccactacacagaacaatattgga
atggacctgagtttcttcaagggaaggttaggcatcaccgctgattattacgtgaaggaa
accagtaacctattgtacccaagagaactttctaaagaaacaggatacagtacggtgctg
gtaaatgttggcaccatacagtcaaaaggttttgagtttgtggccaccggaacaccagta
gttacaaagaattttgaatggagcatcatgggtaacatcacctttgagcgcggaacaata
aagaaactcgcaggtggtattccattctttgtgggtaataaatggtatgtagaagagggt
ggtaaaattggtaacttctatggttggaaaaacctgggtgtataccaatggaatgaatcg
aatgcttatgatgaaaactggaaaaaactaaccttagtgttagagaatggacagcctaaa
attgagaatggtaaacccgtttatacttcaaacggacagccatatactggaaatgtgttg
agtaaaagggcaccggatggtaagcttaaaggtggtgatgcagagtgggaagaggtaaaa
gcggatggggtaattgacgatgaagatcgtcagattctgggcaatgctactcctgatttt
tatctgggtgtgacgaacaatttccgttataaaaatatatcattgtcctttactttcaat
ggttcatttggtggcgaggtatacaatacccttttacaaacacagaataacccttccaat
actggtgccggatctccggatatggtttacaattcctggagaaaacctggtgatattgcc
aaatacccttattacatcgagaagaataaccgtggaaatctgaaaactaatcagaacagt
ttgtatgtagaagatgcttctttctttaggttatcgagcgcacgcttgtcgtaccagctc
aatgaaaaatggtcaaaaaccgttggcatgagaaggatcagtacctatgtatatggtacc
aatttattaacctggaccaattaccgcggttatgatcctgagtttagcaccaacaaccct
ttaaccccgggtgatgacgttggtaaatatccaagaagaagagagtttggtttaggtatc
aatgttaatttctaa
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