Pedobacter sp. PACM 27299: AQ505_09635
Help
Entry
AQ505_09635 CDS
T04140
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AQ505_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pep03021
]
AQ505_09635
Transcription machinery [BR:
pep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AQ505_09635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
HTH_24
Sigma70_ECF
HTH_AsnC-type
HTH_11
HTH_Tnp_4
HTH_23
GerE
Xre-like-HTH
PF0610-like_N
HTH_Tnp_ISL3
HTH_Crp_2
UPF0122
HTH_17
HTH_5
HTH_10
HTH_DeoR
HTH_36
HTH_29
WHD_SOWAH
HTH_Mga
DUF6362
HTH_28
HVO_A0261_N
CEP170_C
Motif
Other DBs
NCBI-ProteinID:
ALL05729
LinkDB
All DBs
Position
2296925..2297503
Genome browser
AA seq
192 aa
AA seq
DB search
MENYAKRSDLELLQLLQLGDRLAYTEIFERYKFILHHHAIKKLPNREEVKDIVQEVFTML
WTKKEGINIHTNLSGYLYTSLRHSILDHFSRQKVRDKYVDSMKNFVGQGTVLPDYRIREK
QLSAAIEAEINLLPEKMRIVFELSRKTYLSHSEIATQLGISEKTVNRQISNALKILRSRL
GLFAYLAFLIRY
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactacgctaagcgctccgacttagaattgttacagctcctccagcttggtgac
cgtttagcttatacagaaatattcgaaaggtataagtttattctgcatcaccatgcgata
aaaaaactcccaaatagagaggaggtgaaggatattgtgcaggaagtgtttaccatgctt
tggacaaaaaaagaaggtataaatatccataccaacctttcgggatacctatatacctct
ttaaggcatagcattctggatcatttttcaagacagaaggtccgtgataagtatgtggat
tctatgaagaactttgtcggccagggaaccgtgttacctgattaccgcatcagggaaaag
caattatccgcagctatagaagcagaaattaacctgttacctgaaaaaatgagaattgtt
tttgaactgagcaggaaaacttacctcagtcatagcgagatcgccactcaattagggatc
tctgaaaaaacagtcaacaggcagatttctaatgctttaaagatactgaggtcgaggtta
ggcctgttcgcttacctggcttttctgatcaggtattaa
DBGET
integrated database retrieval system
