Pedobacter sp. PACM 27299: AQ505_14205
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Entry
AQ505_14205 CDS
T04140
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pep
Pedobacter sp. PACM 27299
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pep03032
]
AQ505_14205
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_14205
Enzymes [BR:
pep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AQ505_14205
DNA replication proteins [BR:
pep03032
]
Prokaryotic type
DNA Topoisomerases
AQ505_14205
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AQ505_14205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
FGase
Motif
Other DBs
NCBI-ProteinID:
ALL06549
UniProt:
A0A0P0NHC4
LinkDB
All DBs
Position
3366063..3368645
Genome browser
AA seq
860 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMGIDVANNFAQTYEVPADK
KHVVAELKKLAKEAEMVWLASDEDREGEAISWHLYETLGLKENKTKRIVFHEITKPAILK
AIENPRTIDYNLVNAQQARRVLDRLVGFELSPVLWKKIKPSLSAGRVQSVAVRLIVDRER
EVNKFNATAAFKVSAQFGTGKGKEVVKAELPQRFEKEADAEKFLNDSIQAGFSVASLETR
PAKRNPAPPFTTSTLQQEASRKLGYSVSRTMQIAQRLYESGRITYMRTDSVNLSETALQA
ASAEINSAWGEKYHHQRTYKTKSAGAQEAHEAIRPTYFNHHTVTGDSSEQRLYELIWKRA
IASQMSEAQFEKTTAQIAISTRKEHLVAEGEVLKFDGFLKVYLESSDDDEAEDSEDNNML
PPLAKGQELSLREMNATERFSRPPARYTEASMIKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRQRSFTSIVLANGEVKKQIKTEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTANVEKEFDEIAQGLQEWTKMLHSFYTPFHQEVETTLENAERANGERLLGVDPVSGK
NVYAKVGKFGPLVQIGQNDDEEKPRYASLAKSQSVATVTLEDALEQFKLPFQLEDYEGKE
VSVGVGRFGPYVKWGDAYISIPKNEEPLSVDRDRAIEIIQEKITADAPVAHYEGLPVTKG
KGRFGPFIKWNDLFINVPKAYNFEELSAADINELIGKKVEKEANRFIQQWNEEKIAIENG
RWGPFIRFGKDMLKLGKNPATGEKYTPEDLASVSLEEVKKLIVEQVPNAFEPKATKKKAA
AKTTAKAAKAPAKKKTVAKK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaatttattaatagttgagtcacctgcaaaagctaaaaccatcgaagggtat
ttaggaaaagatttccttgttaaatcaagttacggacacatccgggatttggttaagggg
gatatgggcatcgatgtagccaataatttcgcccagacctatgaggtccctgccgataaa
aagcatgtagtagccgagcttaagaagttagccaaggaagccgaaatggtatggctagcg
tccgatgaggaccgtgaaggggaagcaatttcctggcacttatatgagacattaggacta
aaagaaaataaaactaaacgtatagtatttcacgagatcactaagcctgccatcttaaag
gcgatagagaatccacgtaccatcgattataacctggtcaacgcccagcaggcacgccgt
gtattggatagattggtaggttttgaactttctccggtattgtggaaaaaaatcaaacca
tctttatctgcaggtagagtgcagtcggtagccgtacgtttaattgtagatagagagcga
gaagtcaataaatttaatgcaaccgctgcatttaaggtatctgcacaattcggtactgga
aaaggtaaagaagtggtgaaagcagaattgccacagcgttttgaaaaagaagcagatgca
gagaaattcttaaatgacagtatccaggcaggattcagcgtggccagtttagagaccaga
cctgcaaaaagaaacccagcgcctccatttacaacttcgactttacagcaggaagcttcc
cgtaaactgggatattcggtgtcgaggacgatgcagatcgctcagcgactgtatgaaagt
ggacgtatcacgtatatgcgtaccgattccgtgaatttatcggaaactgcattacaggca
gcatcagcggaaattaattctgcatggggcgagaaataccatcaccaaagaacttataaa
acgaaatctgcaggcgcacaggaagctcacgaggccatccgccctacttatttcaatcac
cataccgtgaccggcgacagttcagaacagcgtttgtatgaattgatctggaagcgtgcc
atcgcttctcagatgtctgaggcgcagtttgaaaaaacaactgcacagattgccatcagt
acccgaaaagagcatttagttgcagaaggtgaagtattgaaatttgatggtttcctaaaa
gtatacctggaatccagcgatgacgatgaagcagaagattctgaagacaacaacatgctg
cctccattggctaaaggccaggaattgagcttaagagaaatgaatgcaacagagcgtttc
tctcgtccgccggcaagatatacagaggccagtatgattaagaaactggaagaactgggt
atcggtcgtccttctacttatgcaccaacgatctctacgattcaaaaccgtggttatgtg
gtgaaagaagaccgtgatggtcgtcagcgttcctttacctcgattgtattggcgaatggt
gaagttaaaaaacaaattaaaacagaaattacgggtgcagagaaatcaaaactcttccca
acagatataggtgaagtagtgaacgacttcctggtagaacactttaaaggaattgtcgat
ttcaactttacagcgaatgtagagaaggaatttgatgagatcgcacaaggtttacaggaa
tggacgaaaatgctccactccttctacacccctttccatcaggaagtagaaactacatta
gaaaacgcggaacgtgcaaacggagaacgtttactaggtgtggatccagtttctggaaag
aacgtatatgctaaagtaggtaaatttggtccattggtgcaaattggtcagaatgatgat
gaagaaaaaccgcgttatgcgagtttggcaaaatctcagtcggtggccacagtgacactt
gaagacgctttagagcagtttaaactgcctttccaattggaagactatgaaggtaaagaa
gtttctgtaggtgtaggccgctttggcccttacgtgaaatggggagatgcttacatctcc
attcctaaaaacgaagagcctttatcagtagatagagaccgtgcgatagaaattattcag
gagaaaatcactgctgatgctcctgttgcacattacgaaggtttgccggtgacaaaagga
aaaggccgtttcggtcctttcatcaaatggaacgacttgttcatcaacgtaccaaaagca
tataactttgaagaactttcggccgcagatatcaatgaattgattggcaaaaaggtggaa
aaagaagccaacagattcatccagcagtggaatgaggagaaaattgcgattgaaaacggc
agatggggacctttcatccgcttcggtaaagacatgctgaaactgggtaaaaacccggct
acaggtgaaaaatacacacctgaggatctggcatccgtttctttggaggaagtgaaaaaa
ctaatcgttgagcaggttccaaatgcatttgagcctaaagcaacgaagaaaaaagcagca
gctaaaaccactgctaaagcggcaaaagcaccagcaaaaaagaaaacagtagcgaaaaaa
tag
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