Pedobacter sp. PACM 27299: AQ505_15955
Help
Entry
AQ505_15955 CDS
T04140
Name
(GenBank) ligand-gated channel protein
KO
K16092
vitamin B12 transporter
Organism
pep
Pedobacter sp. PACM 27299
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pep02000
]
AQ505_15955
Transporters [BR:
pep02000
]
Other transporters
Pores ion channels [TC:
1
]
AQ505_15955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
Motif
Other DBs
NCBI-ProteinID:
ALL06850
LinkDB
All DBs
Position
complement(3822950..3825013)
Genome browser
AA seq
687 aa
AA seq
DB search
MYNKKKTLFLLFLIVVPFWLSAQTVIDTAAADTAKVLKGVTIKAKPFQEVIPVQSLSGKQ
LENLSSHTVADALRYFAGVQIKDYGGLGGLKTVDVRNMGTHHVGVFYDGIQLGNAQNGVT
DLGKYSLDDMEALTLYNGQKSEIFQSARDFAAASAIYMRTKRPVFEKNRSSNLLLRYKTM
SINYHDPSFRWEQRLTDKVSMSLSSEYIKSNGQYQFRYKRNNQDGTLAYDTTAIRRNSDI
QALRIETGLYGKLNNGSWDAKVYYYDSRRGAPGAIVENKFADGFRQNDKNFFAQAFLVKQ
LSSKYKFQVRVKYADDRTHYLARDTTSLLGETVTEGAQSDDSYHQQELYFSAVNMYSILP
DWDISLATDLQYNRLDAIRKGIQTQFSYPQRYTALVSLASSFKVGEFKVMGNVLGTHVKE
EVRYNAKAPDKTEFTPALFLGYKPFKAYDFNLRAFAKRIFRMPTFNDLYYTMVGSSTLKP
EYMNQYDVGFTYNLPVGKGFLDKFSLQADAYYTHTKDKILAAPTGNLFRWMMTNMGQVRG
KGIASVVNIAGHLNQLNLSANLAYTYAESRDYTKFAGLELSSYGDQIPYTPWHSGSAILN
AGYESWNFNYSFVYVGKRYNGNVNNIKVNEVQPWYTHDLSVQKGFTVNHYKIKGTVELNN
VLNQQYEVVYNYPMPGRTLKFIISMEL
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtataataagaaaaaaacgcttttcctcctcttcctgatcgttgtcccattttggctt
tccgcccagacagttattgatactgcagcagctgatactgcaaaagtactcaagggtgtc
acgataaaagcgaagcctttccaggaagtcatcccagtccaaagcctttccggaaaacaa
ttagaaaacttgtccagtcatacggttgctgatgcgcttcggtattttgccggagttcaa
attaaagattatggtggacttggcggtttaaaaacggtggatgttcgcaatatggggacg
caccatgtgggtgttttttatgatggcatccagctgggtaatgcgcagaatggcgtgacg
gatttagggaagtattccctggacgatatggaagctttaaccttgtacaatggacaaaag
agtgagatcttccagtcggccagggatttcgctgctgcttctgccatttacatgagaaca
aaacgaccggtttttgagaagaatagaagctcaaatctattgctgcgctataaaaccatg
tcgatcaattatcatgatccttcttttaggtgggaacagcggttaacagataaggtgagc
atgagcctcagctctgagtacatcaaatccaacggtcaatatcaattccgttataaaaga
aataaccaggatggaacgctggcttacgatactacagcgatccgcaggaacagtgacatt
caggccttaagaattgagaccggactttatggaaaactgaataatggttcctgggatgcc
aaagtttattattatgattccagaaggggcgcaccgggagctattgtagaaaacaagttc
gcagatggattccgacaaaatgataagaattttttcgctcaggcttttcttgtaaaacag
ctgagttcaaaatataaattccaggtcagggtaaagtatgccgacgatcgtacgcattat
ctggccagagatacgaccagcctattgggggaaaccgtaactgagggggcacaatcagac
gatagttaccaccagcaggagctgtacttttcggcagtaaacatgtacagtatattacct
gactgggatatctcgctggctacagatttacagtacaacaggctggacgccatcagaaaa
ggaatccagacacaattttcctatcctcagcgctatacagcattggtttccctggccagt
tcattcaaagttggagaatttaaagtgatgggcaatgtattgggcacgcatgtgaaagaa
gaagtgcgttacaatgcaaaggcacctgataaaacagaatttacacctgcattattttta
gggtataaaccatttaaagcctatgatttcaatttaagggcatttgccaagcgcatcttc
aggatgccgacttttaatgatttgtattatacgatggtgggttccagtactttgaagcct
gaatatatgaatcagtatgatgtcggttttacctataatctgccggtaggaaaagggttt
ttagacaagttttcacttcaggcggatgcttattatacccatacaaaagacaaaatcctg
gcggcacctacagggaatttattccgttggatgatgacgaatatgggtcaggtgcgggga
aaaggaattgcgtctgtggtcaatatagccggacatctgaaccaattaaacctgtcggca
aacctggcttatacttatgctgaaagcagggattacacgaaatttgcaggtctggaattg
tcttcttatggcgatcagatcccttatacaccttggcatagtggatccgctattctaaac
gccggttatgaatcctggaatttcaactacagttttgtctatgtaggcaagcgatacaat
gggaatgtgaacaacattaaggtgaatgaagtacagccctggtatacccatgatttatct
gttcaaaaaggctttacagttaatcattataaaataaagggaacagtagaactgaataat
gtgctcaatcagcagtacgaggtggtctacaattatcctatgccggggcggacgttaaaa
tttataatcagtatggagctatga
DBGET
integrated database retrieval system
