Pedobacter sp. PACM 27299: AQ505_19225
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Entry
AQ505_19225 CDS
T04140
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQ505_19225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pep03019
]
AQ505_19225
03016 Transfer RNA biogenesis [BR:
pep03016
]
AQ505_19225
Enzymes [BR:
pep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AQ505_19225
Messenger RNA biogenesis [BR:
pep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AQ505_19225
Transfer RNA biogenesis [BR:
pep03016
]
Prokaryotic type
tRNA degradation factors
AQ505_19225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
DbpA
Motif
Other DBs
NCBI-ProteinID:
ALL07433
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All DBs
Position
4566470..4568599
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AA seq
709 aa
AA seq
DB search
MAKNKSSHLELVLIQLISDVLEKSNKEALNYKQVSAKLNITDSDAKETILDILKQQAKKG
IFAEPERGKFRLKDLKTFIIGKVDMTADGAAFIVPDDEFEKDVFVSSRKLHNALHGDKVK
VYIYAKKSGRKNEGEVVEIIQRAKTDFIGVIKISDRFAFVNVDDKKMLHDIFVPLSDLNG
AKNGQKVQVSITDWPEGAKNPIGKISTILGEQGENNTEMNAILAQYGFPLSFPPEVEKEA
NAIPEQVSAAEIEGRRDFRDTVTFTIDPADAKDFDDAISFKKLDNGNYEIGVHIADVSHY
VRPNSALDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANI
ITQWFGRTVIHSNRRFSYEEAQEVIETKEGDHAEEILKLNELAYILREKKFKEGAISFES
TEVKFKLDEYGKPIGVYVKERKDAHKLIEDYMLLANRKVAEFIAKKGKGKQKYTFIYRSH
DSPNLETLNTFALFAARFGYKINTKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAK
AVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNGEKSANEEEYEIAASHSS
AMEKRAADAERASIKYKQAEYLEDNIGNTYTGIISGVTEWGMYIELMANKCEGMIRLRDL
TDDFYVLDEKNYCIVGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLIQ
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaataaatcatctcacttagaactcgttttaatacaattaatcagcgacgtt
ctggagaaaagcaataaagaggccctgaattacaaacaggtgtctgcaaaattaaacatt
acagattccgatgctaaggaaaccatcctcgatatattaaagcaacaggctaaaaaaggc
attttcgcagaacctgaacgtggcaagttcagattgaaagacctgaaaacatttatcatt
ggaaaagtcgacatgactgccgatggtgcggcgtttatcgtccctgacgatgagtttgaa
aaagatgtattcgtctcttcccgtaaacttcacaatgccctgcatggcgataaggtaaaa
gtttacatttacgccaagaaaagtggacgtaagaacgaaggcgaagtagtcgagatcatt
caacgtgcaaaaactgacttcattggtgtcatcaagatctccgaccggttcgcttttgta
aacgtggacgataagaaaatgctgcatgatatttttgttcctttgagcgaccttaacggg
gcaaaaaacgggcaaaaagtacaggttagcattacagactggccggaaggtgcaaaaaat
ccgatcggaaagatcagcaccatccttggagaacaaggagagaacaatacagaaatgaac
gcaattcttgcgcagtatggcttccctttaagcttcccaccagaagtagaaaaagaggct
aatgccattcctgaacaggtttccgctgcagaaattgaaggccgcagagatttcagagat
accgtaactttcacgattgaccctgccgatgcgaaagatttcgatgatgccatttccttt
aaaaaactggacaatggaaattacgaaatcggtgtgcacattgccgatgtttctcattat
gtaaggccaaattcggcgctggataaagaagcgtatggcagagcaacctctgtttacctc
gtagaccgtgtaattccaatgcttccggagcgtctaagcaatggcgtatgctctttacgt
ccgaacgaagataagctgtgtttcgccgctgtttttgaactggatgaaaaagcaaatatc
atcacccaatggtttggccgtacggtaatacattctaacagacgattcagctatgaagaa
gcgcaggaagtaatcgaaaccaaggagggcgatcatgcagaagaaattctaaaactgaat
gaactggcctatatcctgagggaaaagaaatttaaagagggtgccatcagttttgaaagt
accgaggtcaaattcaagcttgatgagtatggcaagccgattggcgtgtacgtaaaagaa
cgtaaagatgcccataaactgattgaagattatatgctgctggccaatagaaaagtagcg
gaatttatcgccaaaaaaggaaaaggcaagcaaaaatatactttcatttaccgctctcat
gattctccgaatctggaaaccttaaacaccttcgcactttttgcggcacgtttcggctac
aagatcaatacgaaatcagataaagagattgcaaaatctctgaattacctgatggaagac
gtggaaggtaaaaaagagcaaaacgtattgacacaactggctattcgttccatggctaag
gcagtttataccactaagaaaaccagccattacggcttggcattcgaccattatacccac
ttcacctctccaatcagacgttaccctgatgtgatggttcaccgtcttcttgccgcttat
ctgaacggagagaaatctgcaaatgaagaagaatatgaaattgcagcttcccattcttca
gcgatggaaaaacgtgctgctgatgcagaacgcgcttcgatcaaatacaaacaagcggaa
tacctggaagataacattggaaacacctacacaggaatcatttccggcgttactgaatgg
ggtatgtacattgaactaatggccaataagtgcgagggcatgattcgcttgagagactta
acggacgatttctatgtacttgacgagaaaaactactgtattgttggacagcgtaaaaag
aaaacttatcagctgggcgatgaagtacaggtaaaagtgaaaaaagtagacctctcgaaa
agacaaatagatttttctttaatccaataa
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