Pedobacter sp. PACM 27299: AQ505_19610
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Entry
AQ505_19610 CDS
T04140
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AQ505_19610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_19610
Enzymes [BR:
pep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AQ505_19610
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AQ505_19610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Helicase_C
PriA_C
Zn_ribbon_PriA
Cas3-like_C_2
nSTAND3
TrmB
Zn_ribbon_6
Tox-PLDMTX
AAA_30
AAA_33
HypA
DUF7129
Motif
Other DBs
NCBI-ProteinID:
ALL07504
UniProt:
A0A0P0NJ53
LinkDB
All DBs
Position
complement(4646924..4649401)
Genome browser
AA seq
825 aa
AA seq
DB search
MSAGQLEFEERETLFIEVILPLSLAKNYIYRVPFELNDQIAVGKRVVVQFGKSKIYTALI
KSISQQAPEIYQAKYIIDVVDEHPVITALQLEFWEWMTSYYLCNEGEVMSAALPAGLKLA
SETIIVLKEEFPQDGEVLNLKQETLINALKVHGRLTIDQVSALLGQKTVYPILNTLLDKE
MVYIAEEVIEKYKPLLKSFVTLHPFYQDEENLKELFSVLERAPKQMNALLTYLKLSRQQS
AIPKAQLLEESDCGPAALKTLMDKEVFVMEKKPVSRLKEQDEDFVLNFELSENQQLALTQ
IETEFEKKDVVLLHGVTASGKTQVYIRLIEKAIENGGQVLFLLPEIALTTQIVERIQRYF
GDAIGVYHSKFNNNERVEIWNKVINGKYRIVLGARSAVFLPFQNLKLIVIDEEHESSYKQ
QEPAPRYQARDAAVYLAWLHKAKVVLGSATPSIESYFNALHQKYGLVTMSERFGGVALPI
QEVISISEETKKKKMISYFSSQLVEEIENTLKLKEQVILFQNRRGYATILICATCGYAPK
CVSCDVSLTYHKTSGKLHCHYCGYHQNSINVCPACGSVHIEQKGFGTERVEEELTLIFPE
AKIARLDVDSTRTKNGLQQIISDFQEKKTDILIGTQMVAKGLDFDNVTLIGVINADTLLN
YPDFRAFERSYQLLAQVAGRAGRRDKQGKVIIQAYDDKHRIITQVIDNKYQEMYTDEIRE
RREFQYPPFTRVIFVNIKHKDMNLLNVAAQKFANVLKGHLGSRVLGPEQPMVGRIRNYYI
KQIIIKTDKNTAITKVKSILKDVILQFQAEKEYRGAIVQVDVDPY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctggtcaactggaattcgaagaacgggaaacgctgtttatcgaagtgatcttg
ccattgtcgttggcgaagaattatatctatagggtgccttttgaactgaatgatcagatt
gcggtaggaaagcgtgtggtggttcagttcgggaaaagtaaaatttatacggcgctgatt
aaaagcatcagccagcaggctccggaaatttatcaggccaaatacatcattgatgtggta
gatgaacatccggtaattaccgctttacagctggagttctgggaatggatgacgagctat
tacctttgtaatgaaggagaagtaatgtcggcggcattgcccgcaggtttgaaactggcc
agtgaaacgatcatcgtgctgaaagaagaatttcctcaggatggtgaagtcctcaatctt
aagcaagaaacactgatcaatgcgttaaaagtgcatggtcggttgacaatagatcaggta
tcggctttgttaggccagaaaaccgtgtatccgatcctcaatactttactggataaggag
atggtttatattgccgaagaggtgatagaaaagtataagccgttgttaaaatcttttgtg
actctccatcccttttaccaggatgaagagaatctgaaagagctcttctctgttttagag
cgcgctccaaagcaaatgaatgcactgttgacttatttaaagctgtccaggcaacaaagc
gcaattccgaaggcacaactgctggaagagagcgattgtgggccagcagcgctaaaaacg
ttgatggataaagaagtttttgtgatggagaagaagccggtgagcagactcaaagagcag
gacgaggattttgtgctgaactttgaattgagcgaaaaccagcagctggctttgacacaa
attgaaacagaatttgaaaagaaagatgtggtgcttttacatggggtgacggcttcgggt
aaaacacaggtatacatcagattgattgaaaaagcaattgagaacggcggacaagtttta
ttcctgctgcctgagattgccttgaccactcagattgtagagcgcatccagcgttatttt
ggagatgcaattggggtatatcactctaaattcaacaataacgaaagggtagaaatctgg
aataaagtgatcaatggaaagtatcggatcgttttaggtgccagatcagcggtgttttta
cctttccagaacttaaaactgattgtcatcgatgaggagcatgaatcttcctataagcaa
caggaaccggcaccacgttatcaggcaagggatgcagcagtgtatctggcctggttacat
aaggcaaaagtagtattgggttcggccacgccctctattgaaagttatttcaatgcgcta
caccaaaaatatggcctggtgacgatgtctgaaagatttgggggagttgctctgcccatt
caggaggtcatcagcatttcagaagagacaaaaaagaaaaagatgatttcttatttttcc
agtcagctggtggaagaaattgaaaatactttgaagctaaaagaacaggtgatcctgttt
caaaacagacgtggttatgccacaatcctgatctgtgcaacttgcggttatgctccaaaa
tgtgtgagctgcgatgtgagtttaacctaccataaaaccagcggcaagttacattgccat
tattgcggttaccatcaaaatagcatcaatgtgtgtccggcttgtggttccgtacatatt
gagcaaaaaggttttggaaccgaaagggtagaagaggaactgacgctgatcttcccggaa
gcgaaaatagcaaggttagacgtcgacagtaccagaacgaaaaatggattgcagcagatc
atttctgatttccaggaaaagaaaactgatatcctgatcggtacacaaatggttgcgaaa
ggactggattttgacaatgtgaccctcatcggggtgatcaatgccgatactttattgaac
tatccggatttcagagcttttgaaagaagctatcaattgctggcacaggtagcgggtaga
gccggaagaagggacaaacagggaaaggtgatcattcaggcttatgatgataaacaccgg
atcattactcaggtaattgataataaataccaggaaatgtatacagatgaaattcgtgag
agaagagaattccagtatccgccatttaccagggttatttttgtcaatatcaagcataaa
gacatgaacctgctgaatgttgccgcgcagaaattcgcgaatgttttgaaaggacatttg
gggagccgggtactcggaccagagcagccaatggtaggtagaatcagaaattattacatc
aaacaaatcattattaagacggataaaaatacagccattactaaagtcaaatcgatatta
aaggacgttatattgcaatttcaggcagaaaaggagtaccgtggcgcaattgttcaggtg
gatgtagacccttactag
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