Pedobacter sp. PACM 27299: AQ505_19720
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Entry
AQ505_19720 CDS
T04140
Name
(GenBank) hypothetical protein
KO
K03555
DNA mismatch repair protein MutS
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AQ505_19720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_19720
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
AQ505_19720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
Roquin_1_2-like_ROQ
Sec20
Motif
Other DBs
NCBI-ProteinID:
ALL07523
LinkDB
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Position
complement(4672221..4673552)
Genome browser
AA seq
443 aa
AA seq
DB search
MTNFKMDRQTFRDLNVFNDASVDESIFSFFKSTRTLGGKEKIQEMMERPSSDIHLLNGRQ
STIKYFHDYKLQMEVKSEQLDLISYYLKFNKVLSRNNMLDALVDFVGNKSTNDYYIVIKG
LEFLISTLKYLSRFIAEQDLTIVPEYLKNKLEEIERILNMEPLKAAMGLQEKKLKFYQVS
KLDHSFRGTSQTVLLHLLQLIYELDAYEAIATVARKRQFCFPEYSESENLEMGLVGFFHP
SFDQPVKNDIFLNQAENMVFLTGSNMAGKSSLLKSLGLAVYLAHIGFPVPASSMKTAVFN
GLLTTINLPDQLGQGLSHYYSEVKRVKEAATALLENNRMFIVFDELFRGTNVRDAYDASF
LIISELTAIRNSVFFISTHLVELAAALKPLNHITFKYLDTFFEGEKPVFTYRLKAGVSEE
RLGMYIIQKEGIVDMIRAVSSKA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgactaattttaaaatggatcgtcaaacttttagggacctgaatgtatttaacgatgca
tcggttgacgaatctatattcagtttttttaaatcaacgagaacattaggagggaaggag
aaaattcaggaaatgatggaaaggccatcttctgatattcatttactgaatgggcgtcaa
tctacgatcaaatattttcatgactataagctccagatggaggttaaaagcgaacaatta
gacttgatcagctattacctgaaattcaataaagtactttccagaaataatatgctggat
gctttggtggatttcgtagggaataagtctaccaacgactattatatcgtaattaaaggg
ttagagtttctgatcagtactttgaaatatctttcccgttttatagctgaacaggacttg
acaatagtgccggaatatttgaagaataaactggaagagatcgaaaggatattgaatatg
gagcctttaaaggctgctatggggcttcaggaaaaaaagcttaagttttatcaggtgagt
aagttagaccatagctttcgtgggacatcgcaaacggtactcctccatttgttacagctg
atttatgaactggacgcttatgaagccattgctacagtggccagaaaaagacaattctgc
tttcctgaatattcagagagtgaaaatctggagatggggctcgttggtttcttccatcct
tcctttgatcagcccgttaaaaatgatatttttttgaatcaagctgaaaacatggttttt
cttaccggatctaatatggcaggtaaatcatccctgttaaagtcgttgggattggctgtt
tacctggcgcatataggctttccagttcctgcaagttcaatgaaaacagctgtttttaat
ggtctattgaccacaattaacctaccagatcagctcggacaaggcctcagccattattat
tctgaagtaaaacgggtaaaagaagctgcaacggcactcctggaaaataaccgaatgttt
atcgtttttgacgaactttttagaggaacaaatgtaagagatgcttatgatgcttcgttc
ctgatcatttcagaactgacggccatccgtaattcggtattttttatctctacacatctg
gtagagcttgcagctgcgctcaagccactaaatcatattactttcaaatacctggatacc
ttttttgaaggagaaaagccggtatttacataccggctcaaagcaggggtttctgaagaa
cgtttagggatgtacatcatccaaaaagaaggaattgtggatatgatccgtgctgtttcc
tcaaaagcctaa
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