Pedobacter sp. PACM 27299: AQ505_20545
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Entry
AQ505_20545 CDS
T04140
Name
(GenBank) RNA polymerase subunit sigma-24
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AQ505_20545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pep03021
]
AQ505_20545
Transcription machinery [BR:
pep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AQ505_20545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
GerE
HTH_3
HTH_20
Sigma70_ECF
KORA
HTH_40
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ALL07668
LinkDB
All DBs
Position
complement(4886973..4887566)
Genome browser
AA seq
197 aa
AA seq
DB search
MSIKHTISDQELQAKIMAGEESAFSELYDRYSPSIFLYIKRFVNSSDLSEDLTQEVFIKI
WQHRSKLEEVRSIKAYLFIMARNHTLNSLKKAMRSDVAMGEVINNFVEQRNNTEEELLAK
EYLEYLEKALAALPLRTREIFKLCRQEGKSYEEVALALGISRNAVKNHMVGSMKVLSASV
KKDLGISLGILLTVFLK
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataaaacataccatttctgatcaggagctgcaggccaaaataatggcaggggag
gagtctgctttttctgagctctacgataggtatagtccttctattttcctgtacatcaaa
agatttgtaaattcttcagatctatcagaagacttgactcaggaggtttttattaaaata
tggcagcacagatctaagctggaagaggtcagatcgataaaggcttacttgtttattatg
gcaagaaaccatacgctaaatagccttaaaaaggcaatgaggtctgatgtagccatgggc
gaggtgatcaataattttgtggaacaaaggaacaatactgaagaggagctcttggcaaaa
gaatacctggaatacctggagaaagcgcttgcagctttgccattgaggacaagggaaatt
tttaaactttgcaggcaggaagggaaaagttatgaagaggtggccctggccttgggaatt
tccagaaatgcagtcaaaaatcacatggtgggttccatgaaagtattgagcgcttccgtg
aaaaaagaccttggaatatctttaggcatacttctgaccgtcttcttaaaataa
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integrated database retrieval system
