Pedobacter sp. PACM 27299: AQ505_21560
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Entry
AQ505_21560 CDS
T04140
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pep
Pedobacter sp. PACM 27299
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pep03032
]
AQ505_21560
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_21560
Enzymes [BR:
pep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AQ505_21560
DNA replication proteins [BR:
pep03032
]
Prokaryotic type
DNA Topoisomerases
AQ505_21560
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AQ505_21560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ALL07851
UniProt:
A0A0P0NLG5
LinkDB
All DBs
Position
complement(5126083..5127144)
Genome browser
AA seq
353 aa
AA seq
DB search
MVETLEELKSSGLVYVTDAKPGIYRKGKPGNFHYVDKEGKRITALPDLERIQQLVLPPAW
TSVWISPRKTGYLQATGIDQAGRKQYRYHAEWTSRRSDRKYFRLLDFGKALPAARKKISR
DLKRKELDERKVLAICVQLMQKTLIRVGNAAYQQLYGSYGLSTLKNKHVKINGNRLMLSF
IGKKGVQQELTLTDKTLARMVQKCKEIPGQDLFQYYTAGKERQAIDSGKVNNYIKEITGD
DFTAKDFRTWGGTLEAMRQLAICCADDLASEKPKKKIILEVLDCVAAKLGNTRAVCKSAY
VYPLLLEAFENEQLGKYLKKIKTVPFDTAEGLELQEKVLMQFLKAMKKKQALN
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggtagagactctggaagaactaaaatcaagcggtttggtatacgtaacagacgctaaa
cctgggatatacaggaaaggaaaacccggtaattttcattatgtagataaagagggaaag
cggattacggccttgccggacctggaaaggattcagcaattggtgctacctccggcatgg
acatctgtttggatctctccacgtaagactgggtatttacaagctacaggaatagaccag
gcaggtaggaagcagtatcgttaccatgctgaatggacttccaggcgatcagatcgcaag
tattttaggttgttggattttggaaaagcactgcccgctgcccggaaaaagatcagcagg
gatttgaaacgcaaggaacttgacgaaagaaaggtgctggcgatttgtgtgcagctgatg
caaaaaacgctgatccgtgtgggaaatgccgcttatcagcagctatatggcagttatggc
ctcagtactttgaagaataaacatgtaaagatcaatggaaatcgattgatgctgagtttt
atcggtaaaaaaggagtgcagcaggaattgactttgacggataaaacactggccaggatg
gtgcagaaatgcaaggaaatccctggccaggatttgttccaatattatacagcagggaaa
gagcggcaggcgatcgattctgggaaggtaaataattacatcaaagaaatcaccggagat
gattttacggctaaggattttcgaacttggggaggtacattggaggcaatgcgtcagctg
gcgatttgctgtgccgatgacctggcttcagaaaagcctaaaaagaaaattattttagaa
gtgctggattgtgtggctgcgaagctcgggaatacacgggcagtatgtaaaagtgcttac
gtttatccgcttttactggaagcttttgaaaatgagcaactcggaaaatatttgaaaaag
ataaagacagttccgtttgacaccgccgagggtttggaattgcaggaaaaggtattgatg
cagtttctgaaagcgatgaaaaagaaacaggccctgaattga
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