Pedobacter sp. PACM 27299: AQ505_22640
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Entry
AQ505_22640 CDS
T04140
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03030
DNA replication
pep03430
Mismatch repair
pep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AQ505_22640
03430 Mismatch repair
AQ505_22640
03440 Homologous recombination
AQ505_22640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pep03032
]
AQ505_22640
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_22640
Enzymes [BR:
pep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AQ505_22640
DNA replication proteins [BR:
pep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AQ505_22640
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AQ505_22640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
ALL08033
UniProt:
A0A0P0NLY1
LinkDB
All DBs
Position
complement(5401405..5405835)
Genome browser
AA seq
1476 aa
AA seq
DB search
MYLIFDTETTGLPRNWNAPITDMDNWPRCIQIAWQLHDELGNLIEHQDYLVKPEGFNIPY
DAERIHGISTELAEEQGISLAEVLEKFNIALSKSKFVVGQNIGFDVNIMGCEFHRLGIES
PMSTMPVLDTCTEVTAELLKIPGGRGGKFKLPTLTELHQYLFGTPFSEAHNATADVEATT
RCFLQLIKMEVFTLEQLQADANYIPAFNKQNPGTIERIGLNHVNLKSASDEIRKRLQKTE
APKVSKKTLEENKQELANVAFAHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAMTDHA
NMMGAFHFVAQILNHNKGVETRNKEAMEKGETPDEVIIKPIVGCEFFVCDDHLDKKRKDD
GYQVVLLAKNKQGYHNLAKMSSIAYTKGFYYIPRIDKAVIEQYKEDIIVLSGNLYGEISS
KLLNLGEKQAEEALLWWKSQFGKDFYIEVMRHSQEDEDIVNVSLVALAKKHDVKVIATNN
TYYINKKDANAHDILLCVKDGEKQATPIGRGRGYRFGLPNQEYYFKTPEEMKNLFADLPE
AIINIQEIVDKIEIYKLAREVLLPKFDISEEFLVKEDEEDGGKRGENKYLRHLTYEGAKK
RYGIITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAMARQLDVSVGPGRGSAAGSAVAY
CLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIIT
YGTMAAKSSVKDTARVLDLPLYEAEKIAKLIPNMKLAKIFTLDEKSLKGALRADEYEKVL
ELKSLAGANDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKDSDLYVT
QFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHKIDLDPDNFPIDDAKTYELFQRG
ETIGIFQYESNGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDL
DACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVAQ
AAEKGHDPTTLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN
MSDIKQVAFFMEECKQMGVSVLGPDVNESGTKFSVNTSGQVRFGLSGIKGVGEKAVESII
IDRNENGQYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDGFGYHRAQYFFVGINDKMNGI
EKMIKFANDFQNNESSAQSSLFGGTASDMVYEPSLPVSPEWSLIDRLKYEKDAIGIFLSG
HPLDNYKLELKEFCQHKVRHLSVVNKIRTGDSTEEVLAEFEGIKNKELVVGGLVVISAQR
MTKTGKPFGTIVFEDYEDTCELALFGDDFIKFKQFLTDGYFLQIRGRVGERFRKEGDWEF
KITSIHLLSELRDKLAKSVTIQVPIEKITDDFMLKINAILEENKASTDHQNCQLLFDVYD
REQNVNVKLPSKSLKINPNNDFLEQLTALNVNPKLN
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgatttttgataccgaaacgacgggattgccacgcaattggaatgcgccgatt
accgatatggataattggcccagatgtattcaaatcgcctggcagttacatgatgagctt
ggaaatttgatcgaacatcaggattatctggtaaaacctgaaggcttcaatattccttat
gatgcagaaagaatccacggtatttcgacggaattagccgaagaacagggtatttctctg
gcagaagtattagagaaatttaatattgcgctgtcaaaatctaagtttgttgtcggacaa
aatattggctttgatgtcaatattatgggttgtgagtttcaccgtttagggatagaaagt
ccaatgagcaccatgccagtgctcgacacctgtactgaagtaaccgcagaattattgaag
attccaggtggccgtggaggtaaatttaaactgcctacgcttacagaattacaccaatac
ctttttggaaccccattttcagaagcccacaatgctacggcggatgtggaggcaaccacg
cgttgttttttgcagttgatcaaaatggaggtatttacgctggagcaattacaggcagat
gccaactatatcccggcctttaacaagcagaatccagggacgattgaaaggatcggttta
aaccacgtaaaccttaagtctgcttctgatgaaattagaaaacggctgcagaaaactgaa
gctcctaaagtatctaaaaagacgctggaagagaacaagcaggaactggccaacgtagct
tttgcccatctacacaaccatacgcaattttctgtactgcaatctaccattaatattcct
tctctaatcaaagccacagctgcacataaaatgcctgcagtagcgatgaccgatcatgcg
aatatgatgggtgctttccatttcgtggcgcagatcctgaaccacaataaaggagtggaa
accaggaataaggaagcgatggaaaaaggagaaacaccggatgaggttattattaaaccc
attgttggttgtgagttctttgtctgcgatgaccatttggataagaaaagaaaagatgat
ggatatcaggttgtattactggcgaagaacaaacaagggtatcataacctggcaaaaatg
tcttctatcgcgtatacgaaaggattctattatatcccccggattgataaagccgttata
gagcaatataaagaggacatcatcgtcttgtctggtaacttatatggtgagatttccagc
aaattgctaaaccttggtgaaaaacaagcagaagaagcattgttatggtggaaatcacaa
tttggtaaagacttctacatcgaagtgatgcgccatagccaggaggatgaagatattgtc
aatgtttcattagttgcgctggctaaaaaacatgatgtgaaggtgatcgccacaaacaac
acctattatatcaataaaaaagatgccaatgcccacgatattttattgtgtgtaaaagac
ggagagaaacaagctaccccaattggccgtggccgtggataccgttttggcttaccaaac
caggagtattatttcaaaactcctgaagaaatgaaaaatcttttcgctgatttaccagaa
gcgattatcaacatacaagaaattgtagataaaatagaaatctataaacttgcccgtgaa
gtccttttacctaagttcgatatttctgaagaattccttgtaaaagaggatgaagaagat
ggcggtaaaagaggggaaaacaaatatttacgccacctgacttatgaaggagcgaaaaag
cgttacggaataattacggacgacattgccgagcgtttggacttcgaattacaaacgatc
gagaaaaccggatatccgggatactttttgatcgtacaggatttcattgccatggccagg
cagttagatgtttctgtaggcccaggaaggggatctgcggcgggatccgcggtggcctac
tgtttgtggatcaccaatattgaccccatcaaatacgatttactatttgagcgtttcctg
aatccagaccgtgtttctatgcccgatatcgatatcgactttgatgatgagggccgtgga
agggtaatggactacgtgatcaataaatatggagccaaccaggtggcacagatcattacc
tatggtaccatggcggctaaatcatccgttaaggacacggcaagggtattggatctgcca
ctttatgaggcagaaaaaatcgccaagctgattcctaacatgaaactggcgaaaatattt
acactggatgagaagagcctgaaaggcgcacttcgggcagacgaatatgaaaaggtgtta
gagttaaaatctttggcaggtgccaacgatttgggtgcaaaaacactggaacaggcacaa
atcctggaaggctcactaagaaatacaggaatccatgcctgcggggtgatcattacacca
agcgacattaccaactttgtaccggtagctaccgctaaagattcagacctgtatgttacc
caattcgacaattccgttgtagaaagtgccggtctattgaaaatggacttccttgggtta
aaaacgttgaccctgatcaaagacactgtaaaactggttaaattcagacataagatcgac
ctcgatccggataacttcccgattgacgatgcgaagacttatgagctgttccagcgtgga
gaaaccatcggaattttccagtacgagtctaacgggatgcagaagtacatgaaggaattg
aaacctaccgttttcggggatttaattgcgatgaatgcactttatcgcccaggaccactg
gagtatattccatcttttgtacgcaggaaaaatggagaagaagagatcaaatatgacctt
gacgcttgcgaagaatatttaaaagaaacttacggaattaccgtataccaggagcaggtg
atgctactttcccagaaacttgccggatttaccaaaggtgaagccgacgttttacgtaag
gcgatgggtaagaagcaaaaggatgtactggataaaatgaaacctaagttcgtagctcag
gctgcagaaaagggacatgatcctactacattagagaaaatctggaaagattgggaagca
ttcgcttcttacgccttcaacaaatctcactctacctgttatgcctggattgcttaccaa
accgcctatttaaaagcgcattaccctgcagaatatatggctgcggtactttccaataat
atgagtgacatcaagcaagtggccttctttatggaagaatgcaaacagatgggcgtttct
gtattgggccctgatgtgaacgagtcaggcactaaattctccgtaaataccagcggacaa
gtacgatttggtctttctggaattaaaggtgtaggagagaaagccgtagaaagtatcatc
attgaccgtaatgaaaatggccaatataagagtgtttatgattttgccaaacgttccaat
acccgtaccgtcaataagaaagcttacgaaagttttgtctatagcggcgcttttgatggc
ttcggctaccatagggcgcagtatttctttgttggcattaacgataaaatgaatggtata
gagaagatgatcaagtttgcgaatgatttccagaacaacgaatcttctgcacaatcctct
ttatttggtggaacagcttctgatatggtgtatgaacctagtttacccgtatctccggaa
tggagtctgatcgacaggttgaaatatgaaaaagatgccatcggtatctttttaagtggt
cacccgctcgataactataaattagagcttaaagagttttgccagcataaagtcagacat
ctttctgtagtcaataagatcagaaccggtgattctaccgaggaagtacttgcagagttt
gaaggcatcaagaataaggaactggtagtaggtggtttagtagtgatttctgcgcaaaga
atgacgaagacggggaaaccttttggaaccattgtgttcgaagactatgaagatacctgt
gaactggccttatttggtgatgattttatcaagtttaaacaattcctcactgatggttat
ttcttacagatcagaggtagggtaggggaacgcttcagaaaagaaggagattgggagttc
aaaatcacttctatccatttattatctgagttgcgtgataaactggcaaaaagtgtaaca
attcaagtgcctattgaaaagattactgatgattttatgctgaaaatcaacgcaatactg
gaagaaaataaagccagcaccgaccaccagaattgtcagttgctgtttgatgtttatgat
agggaacagaacgtaaatgtaaaattgccttccaaatcattgaagattaatcctaataat
gactttttggagcagttaactgctttgaatgtaaatcctaagttgaactaa
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integrated database retrieval system
