Pedobacter sp. PACM 27299: AQ505_22720
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Entry
AQ505_22720 CDS
T04140
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AQ505_22720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pep03021
]
AQ505_22720
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_22720
Enzymes [BR:
pep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AQ505_22720
Transcription machinery [BR:
pep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AQ505_22720
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AQ505_22720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ALL08049
LinkDB
All DBs
Position
complement(5418927..5423213)
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLASPEAILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKRLDLIIYYERYVVIQAGFMAEEGIQYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYNLRHQAANETSQQRKNEALKRLQVVEAFRGA
RTRIENNPEWMIIKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGIVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQSFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGHAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDEGRVVN
GQDFSFYSPEEVIIAYNEKRIDLHAFIKVKVNVKLEDGTIVNKLLETTVGRVLFNQMVPA
EVGYINELLTKKSLRDIIGHVVKITGMSRAARFLDDIKELGFQMAFRGGLSFNLQDVNIP
VEKQALLEQASAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTSFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNAEDCGTLRGMYTTALKDNEDIVE
PLYDRLLGRISLHDVFNPLNGELLVGAGLDIDEDIAKAIEESPLEGVEIRSVLTCENKRG
VCALCYGRNLATGKRVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAK
FDGIIEFENVRTVENDTEEGVKQIVLGRSGEFKIVEPGTNKVIMTNNIPYGSFLYVEDGA
KITKGDKICSWDPYNAVIISEFAGKIEFDAIVEGVTFREESDEQTGHREKVIIDTRDKTK
NPSVRVVDKKGELIRGYNIPVGAHIAIDEGDAVKTGQILVKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREMTIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTTFLENNLADRWDFMIENDEIYDKKVVVEAGDSNTVKPGQILSLRKLRDENS
QLKRKDLRQIEVRDARPATASSMLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVDA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacctcgatcaccattagtttg
gcatcgccggaggctattttagagcgctctagtggggaggtgttaaaacctgagacgatc
aattaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtattttcggtccg
gttaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataagggtattgta
tgtgaccgttgtggtgttgaggttacagaaaagaaagtacgtagagagcgtatgggacac
atcaatttggtggttcctgtagcgcatatctggtatttccgctctttaccaaataaaatt
ggatacctgttaggattgcctacaaagagattagatttgatcatttactacgagcgttat
gtagtaattcaagctggtttcatggcagaagaaggtattcaatatatggatttcttaact
gaagaggaatatcttgatattcttgataagttgccaaaagaaaaccaatatttagacgat
aaagaccctaataaattcatcgccaaaatgggtgctgaagcattagaagacttattgaaa
cgtattgatttagatactttatcttataacttacgccaccaggctgcaaacgagacttct
cagcaacgtaaaaacgaagctttgaaacgtttacaggtagtggaagctttccgtggtgca
agaacccgtattgagaataatccagagtggatgatcatcaagattgttcctgttattcca
ccggaattacgtcctttagtaccgttggaaggtggtcgttttgcgacttcagatttaaat
gatctataccgtcgtgtgattatccgtaacaatcgtttgaaacgtttaatcgagatcaaa
gcgccagaagtaattttacgtaatgaaaaacgtatgttgcaggaagcggttgattcgtta
tttgataactcacgtaaagtaaatgcagttaagactgaaggtaaccgtgctttaaaatct
ctttcagacatcctgaaaggtaaacaaggtcgtttccgtcagaatttattaggtaaacgt
gtggattattctgctcgttctgtaattgttgtaggtccaaaccttaaattacatgaatgc
ggtttacctaaagatatggctgctgagctattcaaaccgtttatcattcgcaagatgata
gaaagaggtatcgttaaaacagtaaaatctgcaaagaaaattgtagacagaaaagacccg
ttagtttgggatattctggagaatgttttaaaaggtcacccggtattactgaatcgtgca
ccaacactacacagattgggtatccagtctttccaacctaaactggtggaaggtaaagca
atccaattacacccattagtatgtaccgcatttaacgcggattttgacggtgaccagatg
gcagtacacttgccattaggacacgccgcaatcttagaagcacaagtattaatgcttgct
gcccacaacattctaaaccctgcaaacggaactccaattactgtaccttcacaggatatg
gtcttgggtctttactatatcactaaaggccgtagaacagacgaaggacgtgtagttaac
ggacaagatttctcattctattctcctgaagaagtaatcattgcttacaatgagaagaga
attgatcttcacgcgtttatcaaagtgaaggtaaatgtgaaattggaagatggaacaatc
gttaataaattgttggaaacaactgtaggtcgtgtactatttaatcaaatggttccggca
gaagttggttacatcaatgaactattgactaagaaatctcttagagatatcattggtcac
gtagtgaaaattaccggtatgtcccgcgcagcaagattcctagatgatatcaaagaatta
ggtttccaaatggcattcagaggaggtttatcatttaatttacaagatgtaaacattcct
gttgagaaacaagcgctattggaacaagcttctgctgaagttgaagaagtaaggaataac
tataacatgggattcattaccaacaacgagcgttacaaccaaattattgatatttggact
cgtatcaataaccgtttaacatcattcgtgatgactcagttatcgagcgataaccaaggt
ttcaactcagtttatatgatgttggactctggagcccgtggttcgaaagagcagattcgt
cagctatgcggtatgcgtggtttgatggctaagcctcagaaatcaggttcaggtggtgag
attattgaaaatccgattctatctaactttaaggaaggtttatcggtattagaatacttt
atctctactcacggtgcgcgtaaaggtcttgcggatacggcgttaaaaacggcggatgcg
ggttacttgacacgtcgtttacatgatgtagcacaggatatgatcgttaatgcagaagat
tgcggtactttaagaggtatgtacactactgcattgaaagataatgaagacatcgttgag
ccattgtacgacagattattgggtcgtatctctctgcatgatgtattcaatcctttgaat
ggtgaattattagtaggtgcgggccttgatattgatgaagatattgcgaaagcgattgaa
gaatcaccattagaaggtgttgaaattcgttcggtattaacctgcgaaaataaacgcgga
gtatgtgcgctttgttacggtcgtaacttagcaactggtaaacgtgttcaaaaaggtgaa
gctgtcggtgtaattgctgcacagtccattggtgagccgggtacacagttaacacttcgt
acgttccacgttgggggtactgcatcgaacatcgctgcagagtctcaaatcaatgctaaa
tttgatggtatcattgagtttgaaaatgttcgtacagtagagaatgatactgaagaaggc
gtgaaacaaattgttttaggtcgttcaggagagttcaaaattgtggagcctggtacaaac
aaagtgatcatgaccaataacattccttacggttcattcttatatgttgaggatggggct
aaaatcactaagggtgataagatttgttcatgggatccatacaacgcggtaattatctct
gagttcgctggtaaaatcgaatttgatgcgatcgttgaaggtgtaaccttccgtgaagag
tcggacgagcaaactggtcaccgtgagaaagtaattatcgatacacgtgataaaactaaa
aacccttctgtacgggttgtggataaaaaaggtgaattgatcagaggatataacatccct
gttggagcccacatcgctatcgatgaaggtgacgcagttaaaactggtcagatcctggtt
aagattcctcgtgcaactggtaaaactagagatatcacaggtggtttaccacgtgtaacg
gagcttttcgaagcacgtaacccttcaaaccctgctgtagtaacagagattgatggtgtg
gtaaccttaggtggcgttaaacgtggtaaccgcgaaatgacgattgaatctaaagacggc
gaagttaaaaaataccttgttccattgtctaaacacatccttgttcaggataatgatttt
gtgaaagcaggtatgcctctgtctgatggttctatctctccagcggatatcttagcgatt
aaaggtccagctgctgtacaagaatatctagtgaatggtattcaagaggtttaccgttta
caaggtgtgaaaatcaatgataaacactttgaggtgattgtacaccagatgatgcaaaaa
gttcatattgaagatccaggagataccactttcttagagaataatcttgcagatcgttgg
gacttcatgattgagaatgacgagatttatgacaagaaagttgttgtagaagctggtgat
tctaacactgtgaaaccaggacaaatcctttctctacgtaaattaagagacgaaaattct
caattgaaacgtaaagatttgagacaaattgaagttcgtgatgcaagacctgcaactgcg
agttcaatgttacaggggatcacacgtgcttcattaggaacgaaatcgttcatctctgca
gcatccttccaggagactacaaaagtgttaaacgaggcagcaattgctggtaaacgtgat
aacatgcttggattaaaagaaaacgtaattgttggacacttaattccttcaggtacaggt
gtacgtggatatgagcgtatcattgtaggttctcaagaagaatacgataaattattagct
tcgaaacaagaagaagtagatgcttaa
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integrated database retrieval system
