Pedobacter sp. PACM 27299: AQ505_22725
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Entry
AQ505_22725 CDS
T04140
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AQ505_22725 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pep03021
]
AQ505_22725 (rpoB)
03400 DNA repair and recombination proteins [BR:
pep03400
]
AQ505_22725 (rpoB)
Enzymes [BR:
pep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AQ505_22725 (rpoB)
Transcription machinery [BR:
pep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AQ505_22725 (rpoB)
DNA repair and recombination proteins [BR:
pep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AQ505_22725 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ALL08050
LinkDB
All DBs
Position
complement(5423301..5427104)
Genome browser
AA seq
1267 aa
AA seq
DB search
MANKVDQRVNFARSKHIIDYPDFLDVQLQSFREFFQIETTSDNRHTEGLFKVFAENFPIT
DSRNIFVLEFLDYFIDPPRYDIPECIDRGLTYSVPLKAKLKLSCNDAEHEDFETIIQDVY
LGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWIEF
ATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYIGRKL
AARVLRKWVEDFVDEDTGEVVSIDRNEVILDRDTVLEDEHIDMIIDAGVKTIILSKDDGA
SQADYTIIYNTLQKDTSNSEKEAVENIYRALRNAEPPDEETARGIIERLFFSDKRYDLGD
VGRYRINRKLKMDTPDHVKVLTKADIIAIVKYLIKLINSKEEVDDIDHLSNRRVRTVGEQ
LYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KINNLGFIETPYKKVKDGIVQVDEDVIYLSAEDEDGKTIAQANAAYDDQGNFTTARVKAR
YEGDFPVIEPEKLDLMDVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEA
PIVGTGLEGRVARDSRTLINAEGEGVVEYVDSNEITIKYVRNDADRLVSFEGDSKTYKLI
KFKKTNQNTCINLKPIVKKGQKVVKGQVLCEGYATENGELALGRNLKVAFMPWQGYNFED
AIVISERIVREDIFTSLHIEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDENGIIRVG
AEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIKGVVIDTKLF
SRAKKTTKAEEKAAIEKLDKRYDLATTNLKNELVDKLFQIVNGKTSQGVFNVYKELLFPK
GAKFTQKSLADLEYAHINPYKWTTDEEKNDQIKLLLHNYGIRVNEELGAYKRDKFAISVG
DELPSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETVLAWAGKELGVKFATPIFDGAKHDEVEDWIAKAGVPASGRTYLH
NGLTGEKFDQPTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPGVPESFNVLVHELRGL
GLDITLD
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaataaagtcgaccaaagagtaaattttgcacgtagtaagcacatcatagattac
ccggattttctagatgtacagttgcaatcattcagagaattttttcagatcgagaccact
tcagataaccgtcatacagaaggtttgtttaaggtgtttgctgaaaacttcccaatcaca
gattctagaaatatctttgttttagaattcctagattattttattgatccaccgcgttac
gatatacctgagtgtattgaccgtgggttaacgtatagtgttccattaaaagcgaagctg
aaactttcttgtaatgatgcagaacacgaagattttgaaaccatcattcaagatgtgtac
ctgggaactattccatatatgacccctaaaggtaccttcgtaatcaacggtgcagagcgc
gtaattgtttcgcaattacacaggtcgccaggtgtattcttcggccagagccgtcacaca
aatggtactaagctttattctgcacgtgtgattcctttcaaaggatcatggatcgagttt
gctactgacgtgaacaacgtaatgtatgcttacatcgaccgtaagaaaaaattcccggta
actacgttattacgtgctatcggttacgattctgataaagacatccttgaattatttgat
cttgctgatgaagtaaaagttagcaagtcaggtttaaagaagtacatcggacgtaaactt
gcagcaagagtgctaagaaaatgggttgaagattttgtggatgaagatactggtgaagta
gtttccattgatcgtaacgaagtaatcttagacagagatactgttttagaagatgagcac
attgatatgatcattgatgcaggtgttaaaacgatcatcttatctaaagatgatggtgcc
agccaagctgattataccattatctataatactttacaaaaagatacttcaaactctgaa
aaagaggctgttgaaaacatctatcgtgctttgcgtaatgcagaaccacctgatgaggaa
actgcaagaggtatcattgagcgtttgttcttctcggataaacgttatgacttaggagat
gtaggtagataccgcatcaaccgtaagttgaaaatggatactcctgatcacgttaaagta
ttgacaaaagcggatattattgcgattgttaaatacttgatcaaactgatcaactctaaa
gaagaagtggatgatattgatcacttgtcgaatcgtcgtgttcgtacagtaggtgagcaa
ttatacgctcaatttggtgttggtttagctcgtatggctcgtaccattcgtgagcgtatg
aacattcgtgataacgaggtgtttactccaacagacttaattaatgcccgtactttatcg
tcggttattaattcattctttggtactaaccagttgtcgcagttcatggaccagacgaat
cctctggcagagatcacgcacaagcgtcgtctttcagccctaggcccaggtggtctttca
cgtgaacgtgccggtttcgaggtgcgtgacgttcactatactcactacggtcgtctttgt
acgattgaaactccggagggtccaaacattggtttgatctcttctctttgcgttcacgcg
aagatcaataacttaggtttcattgaaactccatacaaaaaagttaaagacggaattgtt
caggtagatgaggatgtgatttacctgtctgcagaagatgaagatggtaaaactattgca
caagcgaatgctgcttatgatgatcaaggtaatttcaccactgcacgtgttaaagcacgt
tacgagggtgacttcccggttattgagcctgagaaattagacttaatggacgtagctcct
aatcagattacatcaatcgctgcttcgttgattccattccttgagcatgatgatgcgaac
agggccttgatgggatccaacatgcaacgtcaggccgtaccattgttacgtcctgaagca
ccaatcgttggtacaggtttagaaggtcgcgtagcccgcgattcaagaacactgatcaat
gctgaaggtgaaggtgtagtagaatatgtggattcaaatgagattaccattaagtatgtt
agaaacgatgcagatcgtttggtttcattcgaaggtgatagcaaaacatataaattaatc
aaattcaagaaaaccaatcagaatacttgtatcaacttgaaaccaatcgttaagaaaggt
cagaaagtagtaaaaggacaagtactttgtgaagggtatgctactgaaaatggtgaattg
gcattaggaagaaacttaaaagttgctttcatgccttggcaaggatacaactttgaggat
gcgatcgtaattagcgaacgtattgttcgtgaagatatctttacttcattacacattgaa
gagtttgaattagaagtgcgtgatacgaaacgtggagaagaggaattaacaccagatatc
cctaacgtttctgaagaagctactaaagatttagatgaaaacggtatcatccgtgtaggt
gctgaagtcaaagaaggagacatcctgattggtaagatcactcctaagggagaatctgat
ccttcgccggaagagaaattactacgtgcaatctttggtgataaagcaggtgatgtgaaa
gatgcatccttgaaaactccaccatcgattaaaggtgtggtaattgatactaagttattc
tcaagagctaagaaaacgactaaagctgaagaaaaagcagcgatagagaaattagataag
agatatgaccttgcaacaactaatctgaaaaatgagcttgtagataaattgttccagatt
gtaaacggtaaaacatctcaaggtgtattcaatgtttacaaggaattattattccctaaa
ggtgctaagtttacgcagaaaagtcttgctgatctggaatatgctcacatcaacccatac
aaatggactactgatgaagagaagaatgaccagattaaattgctattgcacaactatggt
attcgtgtgaacgaagaactaggtgcttacaaacgtgataaattcgccatcagtgttggt
gatgaattgccatcaggtattgtacaaatggctaaggtttatgtagctaaaaaacgtaaa
ttaaaagtaggtgataagatggctggtcgtcacggtaataagggtattgtagcccgtatc
gttcgtgatgaagatatgccattcttagaagatggaacacctgttgatatcgtgttgaac
ccactgggtgtaccttcacgtatgaacttgggccagatctatgaaactgtattggcatgg
gccggtaaagaactgggtgtgaaatttgccactccaatctttgatggtgctaaacatgac
gaggtagaagactggatcgctaaagctggtgtacctgcttcaggtagaacttacttgcat
aacggtttaacgggtgagaaatttgaccagccaacaactgtaggtattatctacatgttg
aaattagggcacatggttgatgataagatgcacgctcgttcaatcggaccatactcatta
attacacaacagccattgggtggtaaagctcaattcggtggacagcgttttggtgagatg
gaggtttgggcattagaggcattcggtgcggctaatatcctacaagagatcttaactgtt
aagtcagatgatgtgatcggtagggccaaaacttatgaggcgattgtaaaaggcgaaaac
cttcctacgccaggtgtaccagaatcatttaatgtattggtacatgagttacgcggatta
ggtttagatattacgttagactaa
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integrated database retrieval system
