Pedobacter sp. PACM 27299: AQ505_23340
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Entry
AQ505_23340 CDS
T04140
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pep
Pedobacter sp. PACM 27299
Pathway
pep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQ505_23340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pep03019
]
AQ505_23340
03009 Ribosome biogenesis [BR:
pep03009
]
AQ505_23340
Enzymes [BR:
pep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AQ505_23340
Messenger RNA biogenesis [BR:
pep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AQ505_23340
Ribosome biogenesis [BR:
pep03009
]
Prokaryotic type
rRNA helicases
AQ505_23340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALL08952
UniProt:
A0A0P0NNT8
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All DBs
Position
5566036..5567940
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AA seq
634 aa
AA seq
DB search
MNPFKLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLP
LLELIDFKSNKPQALILCPTRELCLQITNDIKNFSKNISGASVVAVYGGANIMQQLREIR
NGVQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKT
WLFSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFN
PEIFAVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIATD
VAARGIDVQNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKELGKIRQIERI
IGKPFTKATLPTGFDVCEKQLFALVHKVHNVEVNESQIEQYIPRIMDEFAELSKEEVIKR
FASLEFNRFLEYYKNAPDLNSSADDRGERGERGERGERGPRNSEGYTRLFINLGSVDDFT
RGDLLSFVCNNGKISGKSIGKIDLKGVYSFFEVEDATVESLFNNFKGVEFNNRGVRIEKT
ADGDGGGERRGGGERRGGFGGGGRREGGSYGGGRSGGGDRRSSGGGGRREGGSGGGGFRD
FSGRSREDRGGNAGGAGRREGGSGAGSGDRRRRS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
ataaacccatttaaattattggggataagtgatgacgttgttaatgctgtaaaggattta
ggtttcgaaaatccaacacctattcaggaacaaagtattcctgtactgttagagggcaat
aacgattttgttggtttggcccaaacaggaacagggaaaacagccgcatttggcttgccg
ctgttagaattgatagactttaaaagcaataagcctcaggcattgattttatgccctacg
agagagctttgcttgcagattactaatgacatcaagaatttctcaaaaaacatctctggt
gctagtgtagttgccgtttacggtggcgctaacattatgcaacagttgcgtgagattaga
aacggtgtacaaattgttgtggctacacctggtcgtatgttggatattattggcagaaaa
gctattgatttcacgaatgtgaaatacgtagttttagatgaagctgatgagatgctgaac
atgggcttccaggaagacattaacgacattttgtctaccactcctgacgacaaaaaaact
tggttattctccgctactatgcctccagaggttagaagaatagcgaaaaactacatggac
tctccggtagagttaaccatgggtaccaaaaacactggtaacgtaaatattgagcatgag
tactatattgtacgtgctagagataaatacgctgctttaaaacgtatcgtagattttaac
ccagagatctttgcggtagtgttctgtaaaaccaaaatggatacacaggacgttgctgag
cacttgatcaaagacggttataatgcagatgctttacacggagatttatctcagcaacaa
cgtgataaagtaatgcagcgtttccgtgagcgtaacatgcaattgttaattgctactgat
gttgcggcacgtggtattgacgttcagaacgtaacacacgttgtgaattattcattacct
gacgaaattgaaagttatacccaccgttctggtcgtactggccgtgctggtaaaacgggt
atttctatctgtatcgttaactctaaagaacttggaaaaatccgtcagattgaaagaatc
attggtaaaccatttaccaaagctactttacctacaggttttgacgtttgtgagaagcaa
ttatttgctttggtacacaaggttcacaatgtagaagttaacgaatctcaaattgagcaa
tacatccctagaattatggatgagtttgctgaattgagcaaagaagaagtgatcaaacgt
tttgcatctttagagtttaaccgctttttagagtattacaaaaacgctcctgatttgaat
tcttcggctgatgatcgcggtgagagaggtgaacgtggagagcgcggtgaaagaggtcca
agaaacagtgaaggttacacacgtttgtttatcaacttaggttcggtagatgactttaca
agaggtgatttattatcttttgtttgtaacaacggtaaaatcagtggaaaaagcattggc
aaaatcgacttaaaaggtgtgtattcattctttgaagtagaagatgcaactgtagaatct
ttattcaataatttcaagggtgttgaattcaacaaccgtggggttagaattgagaaaact
gctgatggagacggtggcggcgaacgtcgtggtggcggtgagcgtcgtggcggattcggt
ggcggtggcagacgcgaaggcggaagttacggtggcggaagaagcggcggtggcgataga
agaagcagcggtggtggcggcagacgcgaaggcggaagcggcggcggtggtttcagagat
ttctctggaagaagccgtgaagatcgtggcggaaacgctggtggtgcaggcagacgcgaa
ggcggaagcggtgctggtagcggcgacagaagacgtagatcttaa
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