Phalaenopsis equestris: 110021304
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Entry
110021304 CDS
T05601
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03013
Nucleocytoplasmic transport
peq03015
mRNA surveillance pathway
peq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110021304
09122 Translation
03013 Nucleocytoplasmic transport
110021304
03015 mRNA surveillance pathway
110021304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peq03019
]
110021304
03041 Spliceosome [BR:
peq03041
]
110021304
Enzymes [BR:
peq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110021304
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110021304
Spliceosome [BR:
peq03041
]
Complex C
Other components
EJC/TREX
110021304
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110021304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110021304
NCBI-ProteinID:
XP_020575404
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEARDNDAYEEELLDYEEDDEKAPDSVGAKAGVDAAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIIKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSDLEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagcaagggataacgacgcctacgaggaggagcttctcgactatgaggaggac
gacgagaaggccccagactctgttggggcgaaggccggtgttgatgcggcaaagaagggc
tatgtaggaattcacagctccggatttagagactttttgttaaagccagagcttttgcgt
gctatagttgattctggatttgagcacccttcagaagtacaacatgagtgcatcccacaa
gccattctgggaatggatgtcatctgccaagcgaagtctggaatggggaaaacggctgta
tttgttctatcaacccttcaacaaattgaaccaattgctggtcaagttgcagcgcttgtc
ttgtgccacactagggaactggcataccagatatgtcatgagtttgagagattcagcact
tatttacctgatatcaaagttgcagtattctatggtggcgttcacattataaaacacaag
gatatacttaaaaatgaatgccctcatatagttgttggcacaccgggaagaattcttgca
ctagctagagacaaagacctttctttgaagaatgtgagacatttcattcttgatgaatgt
gataagatgcttgagtcacttgacatgcgaagagatgttcaggagatcttcaaaatgact
ccacatgataagcaagtgatgatgttttcagccacactcagcaaggagatacgacccgtt
tgcaagaaattcatgcaagatccaatggagatttatgtagatgatgaggccaaactgacc
cttcatggtctagtgcagcattacatcaaacttagcgacttggagaagaatcgcaaacta
aatgaccttctggatgccttggacttcaaccaggttgtaatttttgttaaaagtgttaac
agagcggcagaactgaacaagttgctagttgagtgcaacttcccgtcaatctgcatccac
tctggcatgtcacaggaagaaaggttgacaaggtataagggcttcaaggaaggacataag
aggattcttgtagcaactgatttggttggcagaggaatcgatattgagcgtgtcaacatt
gtgatcaattatgacatgccagattctgctgacacatacttgcatcgggttggtagagct
ggtagatttggaacaaaagggctggctataacttttgtctcatctgcatctgattcagat
gttcttaatcaggtccaagctagatttgaggttgacatcaaggagctgcctgaacaaatc
gatacttccacgtacatgccgtcttaa
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