Phalaenopsis equestris: 110022886
Help
Entry
110022886 CDS
T05601
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03013
Nucleocytoplasmic transport
peq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110022886
03015 mRNA surveillance pathway
110022886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peq03019
]
110022886
Enzymes [BR:
peq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110022886
5.6.2.5 RNA 5'-3' helicase
110022886
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110022886
mRNA cycle factors
Common to processing body (P body) and stress granule
110022886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
110022886
NCBI-ProteinID:
XP_020577685
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MAAQSVSNLYETASQPDTGGDAYTFLEFNTQGDDYDYPEFQELSQPSRSPTWRAPVAEAR
ADSSNAVLHSADPSGSNPASSSAGSSSFSKAKAAAASSAVDSLAVGMSGLNFEETGEDES
YAFGKGDFTEHACRYCGVQNPACVVRCNIPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQ
WCPLIDDRCFLPWLVKVPSEQEQLRARQVTAQQINKVEELWKTNPDASLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNATIRWDVGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPIDLNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDASEKSELQKLQLLKDEQGEL
SSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGHKPFRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNC
LLTHYKERECLVEGPLNNLKQSMVQFQKPKKIYSDRRLFFGAGPGLVAGDNFAPVSSPSP
NTDKRGGRMKGNSYVPFAPPNGPLKPGVHPVGYPLSRIPLPPFPGGPHSQPYAIPTRGAV
HGPIGAMPHVPQTGNRGFGAVRGNAGGPIGGHLSHQHNSQQALSSFGSGFNFPAVDNLNS
QPSIGTPLSQTGIMTQAPVQGLSQTFRDGFSIGGMSQDYGDDFKSQGSHVAYNVADFSTQ
VSQSGYGLEYASQGPQAGFPSYLNQNTQQGFTHIGTGNGFISQDYMQHGSQGLFTQAGFN
NPSQDESLQSHFGGPGPLQSQGLLNPIYSQPFTQYNAQPLNMQQPSQQQNQSSATQKLHY
NG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcagtcggtcagcaatctttacgagacggcatctcagccggacacgggcggc
gatgcctacacctttctggaattcaacacgcagggagacgactacgactaccctgagttc
caagagctgtcgcagccgagcaggtctcctacgtggcgggcaccggttgcggaagcccgg
gcggattcttcaaacgccgttctccactccgctgatccgagcgggtctaatcctgcttca
tcctccgcgggatcgtcttcgttcagcaaggcgaaggcagcagctgcttcgtcagccgtg
gattcactggcggtgggaatgagcggcctcaactttgaagagacaggcgaggatgagagc
tacgcgtttgggaaaggggatttcaccgagcacgcgtgcaggtactgtggggtacaaaat
ccagcttgtgttgttaggtgcaatattccatcctgccggaaatggttctgcaactcgagg
gggaacacgtctggatctcacatcgttaatcatttggtaagagcaaaacataaggaagtt
tgtcttcataaggacagtccattaggagagacgatacttgagtgctataattgtggctgt
cgcaatgttttcctacttggatttatttctgcaaaaacagagagtgttgttgttctgctg
tgtagagaaccttgtctcagcgtgaatgcactgaaagacatgaattgggatctcagtcaa
tggtgtcctctgattgatgataggtgttttcttccatggttggttaaggttccttctgag
caggagcagctcagggcacgacaggttacggctcagcaaattaacaaggtggaggagctt
tggaagacaaaccctgatgcttccttagaagatcttgagaaacctggagtagatgatgag
cctcagcccgtagctttgaagtatgaagatgcataccagtaccaaaatgtattcgctccg
ctaattaagttggaagctgattatgataagatgatgaaggagtctcagagtaaagataat
gcaacaatcagatgggatgttggccttaataagaagcgaatagcttattttgtctttccc
aaggaagacaatgaactaagacttgttcctggggatgagttaagattgcggtattctggc
gatgcagctcatcctgcatggcaatccgttggacatgttatcaagcttactgctcaggag
gaggttgcgcttgaactgcgcgctagtcagggagttccaattgatttgaatcatggattt
agtgttgattttgtctggaagagtacaagctttgatagaatgcaaggggctatgaaaacc
tttgctgttgatgaaacgagtgttagtggatatatatatcatcaccttcttgggcatgaa
gttgaacttcaagtagtccgtaatactctacctcgccgttttggtgctccaggcctccca
gagttgaacgcctctcaggtttttgctgttaagagtgttcttcaaaaaccaattagctta
atacaaggtccgcctggaacgggaaaaacggttacatctgcagcaattgtgtaccacatg
gctaagcaaggtcaagggcaggtccttgtctgtgctccaagtaatgttgctgttgaccaa
ctagccgagaagataagttcaactggattaaaggttgtaaggctctgtgctaaatcaaga
gaggccgttagctctccggttgagcatctaacgcttcattatcaggtccgtcatctggat
gcatctgaaaaaagtgaacttcagaagcttcaactattgaaggatgaacaaggtgaattg
tcaagtagcgacgaaaagaagtttaaagcattgaagcgtgccacagaaagagagatactt
cagagtgctgatgttatttgttgcacttgtgttggtgccggtgatcctcgattgtcaaac
ttccgtttccggcaggttcttattgatgaatctacgcaggcaaccgaaccggaatgttta
atacctttagttcttggagtcaagcaggttgttcttgttggagaccattgccagcttggt
cctgttattatgtgtaagaaagcagctcgtgctgggctagcacaatctctgtttgagcgt
cttgtacttcttggacataagccgttcagattgcaggttcagtaccgcatgcatccatct
ctatcagagtttccctctaatagcttttatgagggcacccttcaaaatggagtaacaata
aatgaaagacaatcaactggcattgacttcccttggcctgtccctaaccgtcccatgttt
ttttatgtgcagatgggacaagaagagataagtgcaagtgggacttcttatctaaataga
acagaagctgcaaatgtggagaaaattgttaccacatttttgcgaagtggcgttgtacct
tctcagattggagttattacaccatatgaaggtcaaagagcatatattgtgaattatatg
tcaaggaacgggtccctcaggcaacaactctataaagaaatcgaggttgcaagtgttgac
tcattccaaggtagagaaaaggattacatcatcttgtcttgtgtgaggagcaatgaacat
cagggtattggttttcttaatgacccacgtagactgaatgtggcactgactcgagctcgc
tatggcattgttatattgggaaatcccaaggttcttagtaaacagccactatggaattgt
ttgctgacacattacaaggaacgggagtgtcttgtagaaggtcctcttaataatctgaaa
cagagcatggttcaatttcagaagccaaagaagatctacagtgaccgcaggcttttcttt
ggagctggtccgggtcttgtggctggtgataattttgctcccgttagttcaccaagcccg
aatactgacaagaggggtggacggatgaaaggcaattcttacgttccatttgcaccacca
aatggtccacttaaaccaggagtccacccggtgggatatcctttgtcccgaattcctctt
ccaccttttcctggaggcccccattctcagccatatgctatcccaactcgtggagctgtc
catggaccaattggagccatgcctcatgtaccacagactgggaatagagggtttggagct
gttcgtggcaatgctggtggtcctattggaggccatctatcgcatcagcataactcgcag
caagctttgagtagctttgggtctggatttaattttcctgcagtggacaatctgaatagc
cagccttccattggcaccccattgtctcaaacaggaataatgacacaggcaccggttcaa
ggtcttagccaaacttttcgtgatggattttcaattggtggcatgtctcaggattatggc
gatgacttcaaaagccaaggttcacacgttgcatataatgttgcagacttctctactcag
gtttctcaaagcggatatggtcttgaatatgcttctcaaggccctcaagctggattccca
agctacttgaatcagaatacccaacaaggatttactcatattggcacaggaaatggtttc
atctctcaggattacatgcagcatggatctcaaggactatttacacaggctggtttcaat
aatccttctcaagacgagtctcttcaaagccattttggcggacctggtccactacagtcg
cagggcctcttgaatccaatttattcccaacctttcacccaatacaatgcccagccttta
aacatgcagcaaccttcacaacaacagaatcagagctcagctacccaaaaacttcactat
aatggctga
DBGET
integrated database retrieval system
