Phalaenopsis equestris: 110023521
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Entry
110023521 CDS
T05601
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
peq
Phalaenopsis equestris
Pathway
peq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110023521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peq03021
]
110023521
03041 Spliceosome [BR:
peq03041
]
110023521
03036 Chromosome and associated proteins [BR:
peq03036
]
110023521
Transcription machinery [BR:
peq03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110023521
Spliceosome [BR:
peq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110023521
Complex B
110023521
Complex C
U2 SnRNP specific factors
110023521
Chromosome and associated proteins [BR:
peq03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110023521
TFTC complex
110023521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110023521
NCBI-ProteinID:
XP_020578645
LinkDB
All DBs
Position
Unknown
AA seq
1359 aa
AA seq
DB search
MAAGEKDSGGGSHHLSTQKRGAQYLAKYVFRGGAVIHAVQGHLRSPTSDDIVFGKETSLE
MVIVDEDGIVQSVCEQPVFGIIKDLAILGWNDKFRQSRPQMIGKDLLVVLSDSGKLSFLA
FSFEMHRFLVLNHIQLSKPGNSIHHLGRMLAVDPDGSFIAASAYEDQFALFSMSTHLGDS
IVDEKMFYPPENKDETSSVKDTVKTNICGTIWSICFVSHGTDHSSKGFYPIMATIMHRKG
RLRNELLLFGCTIETRAIQFISSYPEVEIGPLALKLSAVPHLSGFAVVFRIDDALLMNFR
DPYCIQCAQRINFGLPSVIEEPDFFHDSSRGMDIDDDGMSSVAVCALLELSDSVAAMAKD
DPMSVDDGMEAASTSKHVCACCWEPVGTASANLVLCLDSGELYILEIHSTIEGIRSDLSE
CLYRGLPCKELLWLKGGFVMGLVEMGDGLVLKLQDGGLVYKSNIQNIAPILDLAVVDDHD
EKKDQMFSCCGMNPAGSLRVIRAGLSVDKLVKTPPVYEGITGTWTLRMKRGDPYHSFLVL
SFVEETRVLSVGLSFCDVTDATGFRPDVCTLACGLVSDGLLVQIHRAGVRLSLPTTAAHV
SGCPHLIPFCTSWCPDNVSISSAAVGHNVILIVTSNPCILFVLGIRSLSAYQNELYEIQH
LSLQHEVSCISIPEQEINFEQLSSNFHFAKKDNQDTVFNGDGCHMTFVVGTHIPSVEVLS
FSPDQGFKFLATGAISIDNALGTPLSSCIPQDVRLVLVDKFYILAGLRNGVLLRYELPQA
SVLSSSSYYPTKLGNFRSVQLELIAFRRFGIAPVVLVPLQNSLNADVVVLCETPWLLHVA
RHSIVYTSISFQAATHATSVSSFDCPNGILFVAESSLHLLELGHRKRLNVGKFSIEGTPR
KVLYHKESKTLLILRTGLRDTSFSSDICRVDPFNGVMISKFSCELGETAKCMQIMRIGYQ
HLLVVGTSQCPGRTIMPNGEAESTKGRLIILNLDHTQNASESSSLTYYSNFSSLLIPSPS
HEAVGHAAEKLSSTSVGSSPDDWSSDGIQIEEMEAGNFRVIYQNQLPGAVLAVCPFLNRY
LLASSGNILNVFCFVTDNPLRLRKHSMTKTRFTITCLNTCFTRIAVGDCRDGILFYSYTD
DLRKLEQLYADPVQRLVADCTLLDMDTAVVSDRRGSISVLSNVDDLDGSESPEKNLLVNC
SYYMGESVISIRKGFFSYRPSLDDLLNDSDDTDIACKSLSNSIVASSLLGSVLLLVPITS
EEHYLLETVQARLAVYPLTAPVLGNDHKEFRGRLSKVGVPTMLDGDMLLQFLELTRIQQE
AVLSLPSFHSTNASTSDSHPPLSVNQVVQILERIHHALT
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggagaaaaggattccggcggcggtagccatcacctttcgacgcagaagcgc
ggcgcgcagtacctggcaaagtatgtatttcgtggtggtgcggtcatccacgctgttcaa
ggccatctccgctctcccacctccgatgacatcgtattcgggaaggaaacatcattggag
atggtgatagttgatgaagatggaattgtgcaatcagtttgcgagcaacctgtatttggg
attataaaagatcttgccatcttaggatggaatgataaatttaggcaatcaaggccacag
atgataggaaaagatctattggtggttctttcagattcaggaaagctttcttttcttgcc
ttctcctttgagatgcacaggtttcttgttttgaaccatatacaattgtccaagccagga
aattcgatacatcatctcggaagaatgctggctgttgatccggatggctcttttattgca
gctagcgcatatgaagaccaatttgctttattttctatgtccacacatcttggagacagc
attgttgatgagaaaatgttctatccaccagaaaacaaagatgaaacaagttctgtgaag
gatactgtgaagacaaacatttgcggcacaatttggagcatttgcttcgtttctcatggc
accgatcattcaagcaaggggttttatcccataatggccactataatgcataggaaagga
aggttaagaaatgaattgttgttgtttggatgtaccatagaaacacgtgctattcaattt
atatcctcgtaccctgaagttgaaattgggccattggcacttaaattatctgctgttcct
catctttctggatttgcagttgtgtttaggatagatgatgctctcctaatgaattttaga
gacccatattgtatacaatgtgctcaaagaataaacttcggtttacccagtgtaattgaa
gagccggatttttttcacgattcttctagaggtatggatattgatgatgatggaatgtcc
agtgtggctgtttgtgcattgctggaactgagtgattcggtggcggctatggccaaagat
gatcccatgagtgtcgacgatggtatggaagcagcttcaacttccaagcatgtatgtgcc
tgttgttgggaacctgttggaacagcgagtgcaaatttggtcctctgtttggactccggg
gaactgtacatccttgaaattcattcaacgattgaaggaatcagatctgatctctccgag
tgcctctacagaggtttgccctgcaaggagcttttatggttgaagggtggttttgtaatg
gggcttgtagaaatgggagatggtttggttctaaagttgcaagatggaggccttgtgtac
aagagcaacattcagaatattgcaccaatcttggatttagctgttgttgatgaccatgat
gaaaagaaagatcaaatgttttcctgctgcggtatgaatcctgcaggatcattgagagtt
atacgtgctggtttaagtgttgataaacttgtgaaaactcctccggtttatgaaggtata
actggcacatggacattaaggatgaaacggggagacccttatcattcatttcttgtattg
tcttttgttgaagagacaagggtactctcagttggcttaagtttttgtgatgtaactgat
gccactggttttcggcctgatgtttgtaccctggcttgtggtttggtgtctgatgggttg
ctagttcagattcatagggcaggtgtgagattgtctttgcccactacagctgctcatgtg
agtggttgcccccacttaataccattttgcacctcttggtgccctgataatgtgtctatt
agttcagctgcagtgggacataatgtgattcttatagttacttctaacccttgcattttg
tttgttctgggcataagatcgttgtcagcctatcaaaatgaattgtatgaaattcaacat
ttgtcgttgcagcatgaggtttcttgcatatctatacccgaacaggaaatcaactttgag
cagctttcatcaaattttcattttgccaagaaagataatcaagacaccgtctttaatgga
gatggatgccacatgacttttgtggtgggtacccacataccatctgttgaggttctctct
ttttcacctgatcaaggctttaagttccttgcgactggggcaatttcaatagacaatgca
cttggaactcctttaagtagctgcatacctcaggatgttcggcttgtgttagttgataag
ttttatatacttgccggcttgaggaacggagtgctactccggtatgagttgcctcaggcc
tcagttctatcttcttcctcgtattatccaacaaagcttgggaacttcagatctgttcag
ttagaattgattgcatttcgacgcttcggtatagctcctgtcgttctggttcctctacag
aattcgctcaatgcagatgtagttgtgctttgtgaaacgccctggcttttgcacgttgca
aggcatagcattgtttatacatcaatctcgttccaagccgccacccatgcaacctcagtg
tcgtcttttgattgcccaaatggaattttatttgttgctgaatccagtttgcatttgctt
gaactgggtcatcggaaaagacttaatgttggtaaattctcaattgaaggaactccacga
aaggtattataccataaagaaagtaagacattgttaatattgaggaccggacttcgggac
acttctttctcatcagatatttgccgtgtggatccttttaatggagtaatgatatcaaag
ttctcatgcgagcttggtgaaacagcaaaatgcatgcaaataatgagaataggatatcag
catctattagtggttgggactagtcagtgtcctggccggactatcatgcctaatggtgaa
gcagaaagtacaaagggacggcttatcatattaaacttggaccatacacaaaatgcttct
gaaagcagttcattgacctattactctaatttttcatctcttctgattccttccccctcg
catgaagctgttgggcatgcagctgaaaagttatcaagcaccagtgttggtagcagtcca
gatgattggagtagtgatggaattcaaattgaagaaatggaagcgggaaacttcagggtg
atttatcagaatcaattgcctggtgctgttcttgctgtctgcccatttctaaaccgttat
ctattggcttcctccggtaatattctgaacgtcttctgttttgtgactgataatcctctg
cggctgagaaagcattccatgaccaagacacgctttaccataacttgcttgaatacatgt
ttcactagaattgcagttggtgattgtcgcgacggcattcttttctactcttatacagat
gatcttaggaaattggaacagctttatgctgatcccgtacagagattggttgctgactgc
actctactagatatggacactgctgttgtctcagaccgtagagggagcatctcagttctg
tctaatgttgatgacttagatggtagtgagagtccagagaagaacctgttagtaaattgt
tcctattacatgggagaatctgtcataagcatccgcaagggttttttctcatacagaccc
tcattagatgacttgttgaatgattctgatgacactgacatagcctgcaaatctttaagt
aatagcattgtggcaagctcacttcttggaagtgtgctcctccttgttcctattacaagt
gaagagcactatttgttagagactgtgcaggccaggcttgctgtttatcctttgactgct
cctgttctagggaatgatcataaggaattccgtggacggctctcaaaggttggagttccc
accatgcttgatggagacatgctcctccagttcttggagttgactagaatccaacaggaa
gctgtgctctctctccccagctttcacagcacaaatgcttctacttctgattcacatcct
cctctctctgtgaatcaggtcgttcagatattagaaagaattcatcatgcgttgacctga
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integrated database retrieval system
