Phalaenopsis equestris: 110027500
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Entry
110027500 CDS
T05601
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03013
Nucleocytoplasmic transport
peq03015
mRNA surveillance pathway
peq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110027500
09122 Translation
03013 Nucleocytoplasmic transport
110027500
03015 mRNA surveillance pathway
110027500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peq03019
]
110027500
03041 Spliceosome [BR:
peq03041
]
110027500
Enzymes [BR:
peq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110027500
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110027500
Spliceosome [BR:
peq03041
]
Complex C
Other components
EJC/TREX
110027500
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110027500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110027500
NCBI-ProteinID:
XP_020584617
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MMGEVRQNDAYEEELLDYDDEEEKATVSLGAKINGESGKKGYVGIHSSGFRDFLLKPELL
RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVSGQVAAL
VLCHTRELAYQICHEFERFSTYLIDIKVAVFYGGVHIGKHKDILKNECPHIVVGTPGRIL
ALARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVSGMKHYIKLSELEKNRKLNDLLDALDFNQVVIFV
KSVSRAAELNKLLLECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIE
RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKEL
PEQIESKLILSTYMPS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgaagtgaggcagaacgacgcctacgaggaggagcttcttgactatgacgat
gaagaagagaaggctactgtttcgcttggggcgaaaatcaacggcgaatcaggaaagaag
ggttatgttggaatacacagctccggatttagagattttctgttgaaaccagagcttcta
cgggccatagttgattctggatttgagcacccctccgaagtacaacatgagtgcatacct
caagccattttgggaatggacgtcatttgtcaagcgaagtctggaatgggaaaaactgca
gtttttgttctctcaacccttcaacaaattgagcccgtttctggtcaggttgctgcactt
gtcctgtgtcatactagagaactggcttaccagatatgtcacgagtttgagagattcagc
acgtacttgattgacatcaaagttgctgtattttatggtggcgttcacattggaaagcac
aaggacatactgaaaaatgaatgtcctcatatagttgttggaacaccaggaagaattctg
gcacttgctagagataaggacctttctctaaggaatgtgaggcatttcatccttgatgaa
tgtgacaagatgctagagtcacttgacatgcggagagatgtacaggagatcttcaaaatg
actccacatgataaacaagtcatgatgttttcagccacgctaagcaaggagatacgccct
gtttgcaagaaattcatgcaagatcctatggaaatttatgtggatgatgaagcaaaacta
accctgcatgggttagtttcaggtatgaaacactacatcaaactcagcgaattggagaag
aaccgtaaattgaatgatcttctggatgctttggatttcaatcaggttgtaatttttgtc
aagagtgtcagcagagcagcagagctgaacaaattgcttctcgagtgcaacttcccatct
atctgcattcattctggaatgtcacaggaagaaagattaacaaggtacaagggattcaag
gaagggcataaaaggattcttgttgctaccgatttggttgggaggggaatcgacatcgag
cgtgtaaacatcgtgatcaactatgatatgcctgattctgccgacacttacttgcaccgg
gttggtagagctggcagatttggcaccaagggtctggctatcaccttcgtctcctcagca
tctgattcagacgttcttaatcaggttcaagcaagatttgaagttgatatcaaggaattg
ccagagcaaattgagagcaaattgatactttccacatacatgccgtcgtaa
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