Phalaenopsis equestris: 110028566
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Entry
110028566 CDS
T05601
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
peq
Phalaenopsis equestris
Pathway
peq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110028566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peq03019
]
110028566
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110028566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
110028566
NCBI-ProteinID:
XP_020586128
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
METEIPSSESVEQKAEALASLISGPLSSSASRLLSRSRNIPYGKDFHFYNNFDEFKLPAR
GIASTAESSLGVIASSLSLWGDRKSPPIPNELDEAYEWLVNLNDDFLERFGVAMDDFRSL
REKQERKVGAVDSGDGFQLVCGRKKKREVVQKQEGELGFSASSEIKMVSRDKKTTAARAK
VPFHLPNIPKPQLEFKILVNNNNTPFEHVWLERSEDDSRFMHPLEKLSVLDFIDKDIGSD
EITKPLSLESTPFKLIEGVKELKELAAKLRVANEFAVDLEHNQYRSFLGLTCLMQISTRT
EDFIVDTLKLRVHVGPYLREVFKDPLKRKVMHGADRDIIWLQRDFGIYVCNLFDTGQASR
LLQLERNSLEYLLRHFCDVEANKEYQNADWRLRPLPDEMIKYAREDTHYLLHIYDLMRSR
LLSLSSDENDLLLEVYKRSSEICIQLYEKEVLTDTSYLHIYGLSEADFDAKQLAIVAGLC
EWRDKVAREEDESTGYILPNKAVLEIARQMPQSSGSLRRLVKSKHHYVERHLNAVLRIIK
NAISNSSAFESIAEEIRKGRAEALAMQISEAENSESVNPNEHAMDCTAAEGVGKSSNKLD
ILSGADNINPTSMNQSLGQITSVSRLQGEKKIPELSLLEISYSSKNVDAVETVKRDMIDN
EAASSSQPTKDGTPTASVQVMKKPACAFGALFGNTSRKKTKPLKGNDSELEKNEKKVEQI
KASVILPFYSFPSKETIPEPTPTDKNIAPTQTVQSPDQHSLTATLEEVIPLENSMDSSES
PPKSPENVDVINSNAEISKADAHATEPLMSLSDLHSGFQQMSQHAHEKSGLRGNSWSSSQ
ISPFDYAAARRSMKFGEENGGEDDGSTSDGVLMASRSAKKKVFPSSGEQREGGGQPRRRQ
AFPPSGNRSTTYRC
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgaaataccgagttcagagtcagtcgagcagaaggcagaagctctcgcatct
ctcatttctgggcccttatcctcctcggcctccagactcctcagtcgttcacgcaacatt
ccttacgggaaggatttccatttctataataacttcgacgagttcaagctcccggcgagg
ggtatcgcttccacggccgagtcttcgcttggggttattgcttcttcgttgtctttatgg
ggtgataggaaatcgccgcctattcccaacgagctggatgaagcttatgaatggcttgtg
aacctgaacgatgattttcttgagaggtttggggtcgctatggatgatttcaggagtttg
agggagaaacaggagcggaaggttggggcggtggattcgggagatgggtttcagctggtt
tgtgggaggaagaaaaaaagggaggttgtgcagaaacaggaaggggagctggggttctct
gcttcttcggagatcaagatggtttccagggacaagaagacaacggctgcgagagccaaa
gtgccatttcacttgccgaatattccaaaaccgcagttggagtttaaaatattagtgaac
aacaataatactccgttcgaacatgtttggttggagaggagcgaggacgacagccggttt
atgcatcccttggagaagctctctgtgcttgattttattgataaagatattggttcagat
gaaataacaaagccactttctctagaaagcactccatttaaacttattgagggagtgaag
gagttgaaggaactggctgctaaattacgtgtggcaaatgaatttgcggttgatttggag
cacaatcagtatcgatcatttcttggactgacttgtttgatgcaaatttctactagaaca
gaggatttcatagtggacacacttaaactgcgggttcatgttggcccatacctgagagaa
gtctttaaagatccattgaagagaaaggtcatgcatggggctgatcgtgatataatttgg
cttcaacgggactttggcatatatgtctgtaacctttttgacactgggcaggcttcaagg
ttactgcagctggaaagaaatagccttgagtaccttttacgccacttttgtgatgttgaa
gctaataaagaatatcaaaatgcagattggagactaaggcctttacctgatgaaatgatc
aagtatgcccgagaagatacacattatctactgcacatctatgatttgatgagaagcagg
ttgctttcattatcctctgatgaaaatgatcttcttttagaggtttacaagcgcagctct
gaaatttgtatacaactctatgagaaggaagttttaacagatacttcatatctccatata
tatgggttgtctgaagctgattttgatgcaaagcaacttgctattgttgctggtttatgt
gaatggagggataaagtcgctcgtgaagaggatgaaagtactggatatatattaccaaac
aaagctgttcttgagattgctagacaaatgcctcaatcatctggaagcttacgtcggtta
gtcaaatcaaagcaccattatgttgagcgccacctcaatgctgtcttgaggattattaag
aatgcaatttctaattcttctgcttttgagagcattgctgaagagataagaaaggggcgt
gctgaagctttagcaatgcaaatttcagaagctgagaactcagaatctgttaatcctaat
gagcatgctatggactgcacagctgctgaaggagttggtaaaagttccaataaattggat
atactatcgggggctgacaatataaatcctacaagcatgaatcagtcccttggtcaaatc
acttcggttagcagacttcagggagagaagaaaattccagagttgtcattattagaaatt
agctattcatccaaaaatgttgatgcagttgaaacagttaagagggacatgattgacaat
gaagctgcttcatcttcccaaccaaccaaagatggtacaccaacagcttctgttcaggta
atgaaaaagccagcatgcgcttttggagctttgtttggaaacacttcgaggaagaaaaca
aaacctttgaaagggaatgattcagagctggagaagaacgagaaaaaggtggagcagatc
aaagcttccgtgatcctcccattctattcctttcccagcaaagaaaccatccctgaacca
actcctacagacaagaacattgctcccacacaaactgtgcaaagcccagatcagcactca
ctaactgccacattggaagaagtaatcccattagaaaacagcatggacagctccgagtcg
ccacccaaaagccccgaaaacgttgacgtcatcaatagcaatgctgaaatctctaaagca
gatgcccacgcaacagaaccgctcatgtctctctctgatctccattccggatttcagcag
atgtcccaacacgcccatgagaagagtggcttgcgagggaacagttggtcttcttcgcaa
atttcgccattcgactatgcggcagcaagaagatctatgaaatttggtgaggaaaatgga
ggggaagatgatggtagcacgagcgatggggttcttatggcttcaagaagtgcgaagaag
aaggtttttccatcgagcggggagcaaagggaggggggaggacagcctcggcggcggcaa
gcatttcctccttccggcaacagaagcaccacttaccgttgctga
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