Phalaenopsis equestris: 110030136
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Entry
110030136 CDS
T05601
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110030136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
peq03019
]
110030136
03041 Spliceosome [BR:
peq03041
]
110030136
03009 Ribosome biogenesis [BR:
peq03009
]
110030136
03016 Transfer RNA biogenesis [BR:
peq03016
]
110030136
Enzymes [BR:
peq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110030136
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110030136
Spliceosome [BR:
peq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110030136
Complex C
U4/U6.U5 tri-SnRNP related factors
110030136
Ribosome biogenesis [BR:
peq03009
]
Eukaryotic type
Pre-60S particles
Helicases
110030136
Transfer RNA biogenesis [BR:
peq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110030136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
110030136
NCBI-ProteinID:
XP_020588380
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MSSLLKRKSLDGATPDTPIPHKSHRRDEPIFIDEPVACLHDVSYPEGYVASHPGHPRTAE
GNTKPAKEFPFELDPFQSEAVKCIENGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIMREVA
WIIFDXERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKIHHQPCHIVYTDYRPT
PLQHYIFPSGGDGLYLVVDENGKFREDSFQKALNALVPAKEGNRKRDFAKLQKALLEGKP
SEESDIFKLVKMLIQRQYDPVILFCFSKRECEFLAMQMAKMDLNDDQEKTNIETIFWSAM
DLLSDDEKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG
LNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDQRGICILMVDEKMEPSTA
KMMLKGSADFLNSAFHLSYNMLLNQLRCEDGDPEKLLRHSFYQFQADRALPDLEKQEKKL
IRERDSIVIEEEDSLKDYYNLLQQYTSLKKDVHNIVFSPKYCLPYLQPGRLVSLLYDSND
RRPTFLKQEQVTWGIIINFQKLNSPDEAVDKRPEDLQYKVDVLTRCVVFKEAGTKKSVKI
VHLKEQGEPVVVSVPLSQIDSLSIVRLYIPKDLIPLEARENMLKILTEVHSRFMKDGIPL
LDPEEDMKVQSNSYRKAVRRIEALDRLFEKHEIRNSPLIQQNLQVFHDKLELSAKIKSVK
KSMRSSTALAFKDELKARKRVLRRLGYITREDVVGVKGQVACEISSADELTLTELMLSGS
FKDMSIEEMVALLACFVWQEKLQDGPKPREELDSLFSQLQETARRVANVQLDCKVQIDVE
SFVNSFRPDIMEAVYAWAKGSKFFEIMELSSVFEGSLIRAIRRLEEILQQLTSAAKSIGE
TQLEDKFQEAVMKIKRDIVFAASLYL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcattgctgaagagaaaatccctagatggtgcgactccagacactcccatacca
cataaatcgcacaggagggacgaaccgatcttcatcgatgaacctgtggcctgcctgcac
gacgtctcttacccggagggctatgtcgcctctcacccaggacatccccgcactgccgaa
ggtaatacaaagccggctaaggagttccccttcgagctcgaccccttccagtccgaagct
gttaagtgcattgaaaatggcgaatccgtaatggtatctgcacatacatcagctggaaaa
actgttgttgcattatatgctatcgccatgtcactgagaaaccaacaacgggttatttac
acctctccaatcaaggctcttagcaaccagaaatacagggagtttaaggaggagttttct
gatgttggcctcatgacaggtgatgtcaccattgagcctaacgcctcttgtctggtaatg
accactgagatttggagaagcatgcagtacaaagggtcagagataatgcgggaggtggcc
tggatcatatttgatngggaaagaggtgttgtgtgggaagaaagtattgttatggctccc
aagaactctcgtttcgttttcctttcagctacggtgcctaatgccaaggaattcgctgat
tgggttgcaaagatccatcatcagccctgtcacatagtttacacagattatcgaccaaca
ccccttcaacattacattttcccttctggaggggatggtttatatttggtggttgatgag
aatggaaagtttcgtgaggacagttttcagaaagctttgaatgctctcgttcctgctaaa
gaagggaatagaaaaagggattttgcgaaattgcagaaggcattgctggaaggaaaaccc
agtgaggaaagtgacatttttaagctggtgaaaatgttaattcagcgccagtatgatcct
gttatattgttctgctttagcaagagagagtgtgaattccttgcaatgcagatggcaaaa
atggatttgaatgatgaccaagagaaaactaatatagaaaccatcttctggagtgcaatg
gatttactttctgatgatgaaaagaagcttccccaggtttccaacattctacccttgtta
aaacggggtatcggcgtgcaccattctggtcttcttcctattctgaaggaagtaatcgag
atactttttcaagaaggcctaatcaagtgtttgtttgctacagagaccttcagtattggt
ttgaatatgcctgcaaaaactgttgtgttcacgaatgttcgtaaatttgatggggataaa
ttcagatggttatccagtggggagtatattcaaatgagtggtcgtgctggccgtcgaggt
attgatcagcgtggtatttgcattttgatggtagatgaaaaaatggagccttcgactgca
aaaatgatgttgaaaggaagtgctgatttcttaaatagcgcctttcacttgagctacaat
atgctattaaatcaattacgctgtgaagatggtgatccagagaagcttcttcgacattca
ttctatcagtttcaagctgaccgggctcttcctgatctcgagaaacaagagaagaaattg
ataagagagagggactctattgtcatagaagaggaggatagcttgaaggactactacaat
ctattgcaacaatatacaagtctgaagaaggatgtccataatatagtgttttctccgaag
tattgtctaccatacttgcaacctggccggctagtgtctctcttgtacgatagtaatgac
agaaggcccacattcctcaaacaagaacaagttacatgggggataataatcaatttccaa
aagctcaacagcccagatgaagctgtggataaaaggcctgaagatttacagtacaaagtt
gatgtcttgacgagatgtgtggtttttaaagaagcaggaacaaagaagtctgttaaaatt
gttcatttaaaagagcagggagagcctgttgtggtatcggtgcctctttcacagattgat
agtttgagcattgttcgtctttacatacccaaagatctcataccgttagaagctcgagag
aacatgctcaagattctgacggaagtccattccagattcatgaaggatgggattcccctt
ttagatcctgaagaagatatgaaagtacaaagtaactcgtatagaaaagctgtcagaagg
atagaggccctagatagactatttgaaaaacatgaaatccgaaattctccacttattcag
caaaacctgcaagtatttcacgataaactggaattatcagcgaagatcaagtcagtcaag
aaatcaatgcgttcttccactgccttggccttcaaagacgagctcaaggcacgcaaaagg
gttctacgaagattagggtacattactagagaggatgttgtaggggtgaaaggtcaagtt
gcttgtgagattagctctgctgatgaattgacgctaactgagcttatgctgagtggttca
tttaaggatatgagtattgaggaaatggtggctcttctcgcatgttttgtttggcaggag
aagctccaggatggtccaaaaccaagggaagaactggactctcttttctcccagctacaa
gaaacagcacggagagttgccaatgtgcaattagattgcaaggtgcagatagacgttgaa
agttttgtgaattcctttcgcccggatatcatggaagctgtttatgcttgggcgaaggga
tcaaagttcttcgagataatggagctgtcctcagtctttgaaggtagtttgattagagcc
atcagaaggcttgaggagattctgcagcagctgacttctgcggccaaatcaatcggagaa
acccaactggaagataagttccaggaggctgtcatgaagatcaagcgtgatatagttttt
gctgcttccttgtacttgtag
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integrated database retrieval system
