Phalaenopsis equestris: 110038885
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Entry
110038885 CDS
T05601
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
peq
Phalaenopsis equestris
Pathway
peq03008
Ribosome biogenesis in eukaryotes
peq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110038885
09123 Folding, sorting and degradation
03018 RNA degradation
110038885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peq03021
]
110038885
03019 Messenger RNA biogenesis [BR:
peq03019
]
110038885
03009 Ribosome biogenesis [BR:
peq03009
]
110038885
03016 Transfer RNA biogenesis [BR:
peq03016
]
110038885
Transcription machinery [BR:
peq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110038885
Messenger RNA biogenesis [BR:
peq03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110038885
Ribosome biogenesis [BR:
peq03009
]
Eukaryotic type
Pre-60S particles
RNases
110038885
Transfer RNA biogenesis [BR:
peq03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110038885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110038885
NCBI-ProteinID:
XP_020599462
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEPVEIEGVKIPVDTSKPNPNGIEYDNLYLDMNGIIH
PCFHPEDRPAPTSFDEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEDRLRLEFEREGRKLPPKKESEVFDSNVITPGTEFMSVLSVALQYYIHL
RLNYDPGWKHIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAADCQGHAKRKSGEFDEKGDSAVVAKK
PYQFLNIWTLREYLEFEFRMPNPPFEVDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRVMKGYLTDSWKPNLSRVEHFIQAVGSYEDRIFQKRARLHQRQAERIK
REKVQALRGDDIDPQLNPDLIVPITRYKGSRLASGASPSPFQQFESSYGTRNPPLTRKDT
ENEKAASEMHILKINKRTTHEAGSYVRAQKAARISAEGATIGGAIVEAEKSLEAEMLENK
EEMKTKLKELLRNKSDLFNAENPEEDKVKLGEPGWKARYYEEKFSAKSPEEVELIKRDIV
LRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDIKGLGQLNIEFKLGSPFKPFSQLMG
VFPAASAHALPFHYRRLMSDPNSPIIDFYPTDFEVDMNGKRYSWQGVAKLPFIEEDRLLA
EIKNVQHTLTKEEIRRNSVMFEMLFVNVSHPLSPYMFSLSNQHGQLSEKEKAEIKEKIDP
VASGGMNGYLSLCNGDPCPPVFRSPINGLEDIMDNQVICTIYKLPDAHKHITQPPPGVIF
PKKTVTIGDLKPPPALWHEDTGRRPLENGSTTSRQNPPGSYSGKQLGEAAHRLVINSLQA
RTGREHDNMEQRRHPHPSSHPPHSPNSFPYSDGRQLPFAAGEERHAIGQSQRYNVVSTSS
SYRYERSENHPFKRNEHHSSHHQFERNEYGVRNTTHYEQRVPAQSHPQYGTSAYPVATRN
VIQQPVHGSVPARSGYGGFNAYGVRPQWNPQYDPRRGPPSHQAQFERTNTNPQPTNYSNN
RYVVLDRGLNKRPRPPPPPGYGHY
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggcgttttaccggtggcttgcggagaagtatcctatggtagtagtggac
gtagtagaggaggaaccagtggagatcgaaggcgttaagatccccgtcgatacgtcgaag
ccgaaccctaatgggattgaatacgacaatctatatctcgatatgaatggcatcattcat
ccttgctttcatccagaggaccgccccgctcccacctcctttgatgaggttttccaatgc
atgtttgattacattgataggctttttgtcatggttcggcccaggaagcttctctttatg
gctattgatggtgttgcaccgagggctaagatgaatcagcagcgttctagacgtttcaga
gcagctaaggatgcagcagatgcggcggctgaagaggaccgactgcgtctggagtttgag
agggaaggaagaaagcttccaccgaagaaggaatcagaagtttttgattctaatgttatt
actcccgggaccgagtttatgtctgttctgtctgtagcactgcagtattacattcatctg
aggctaaactatgaccctggttggaagcacataaaagtaatcctttctgatgcaaatgtt
cccggtgaaggggaacacaaaattatgtcatacatccgtcttcaacgaaatttgcccggt
tttgatccaaatactcggcactgcttgtatggtctggatgcagatttgatcatgttagct
ttggccacacatgaggtgcatttttcaattttaagagagattgtcttcactcctggacag
caagacaaatgctttttatgcggccagatgggccatttagctgcagattgccaaggacac
gctaaaagaaaatctggtgaatttgatgagaagggtgatagtgctgtagttgcaaagaaa
ccttaccagtttctcaacatctggactcttcgagagtacttggaatttgaatttagaatg
cctaatcctccctttgaggttgattttgaacgtatagtagatgatttcatctttatgtgt
ttctttgttggaaatgattttcttccccatatgccaacgctggaaatccgtgagggtgca
ataaatttacttatggctgtttataagaaggaatttagggtgatgaagggctatttgacg
gattcatggaagcctaatttgagcagagttgagcattttattcaggcagttgggtcttac
gaggatagaattttccaaaaaagagctcgcttacatcagcgtcaagcggaaagaataaaa
cgcgaaaaagtacaagccttacgaggagatgatatagatcctcaactgaatcctgatctt
atagtgcccattactcgttataagggttcacgtctcgcttctggcgcttccccttcccca
tttcaacagttcgagtcttcttatggaactcgcaatccgccgcttacaagaaaagacaca
gaaaatgaaaaagctgcttcagaaatgcacattttaaagatcaacaaaagaacaacacat
gaggcaggatcttatgttcgagcgcaaaaggctgcccgcatttcagcagagggtgcaact
attggaggagcaattgttgaggctgagaagagtcttgaagcagaaatgcttgaaaataag
gaagaaatgaaaacaaagctgaaagaattgttacggaataaatctgatcttttcaacgct
gaaaatccagaggaggacaaggttaaacttggagagccgggttggaaagcaaggtactat
gaggaaaaattttctgcaaaatcccctgaagaagttgagcttattaaaagagacattgtt
ttacggtacacggaaggattgtgttgggtgatgcattattattacgaaggtgtttgctca
tggcaatggttctacccctaccactatgcaccgtttgcctctgatatcaagggtctgggt
caactgaatatagaattcaaacttggctctcctttcaagccattcagtcagctaatggga
gtgtttccagctgcaagtgcccatgctttaccatttcattacaggcgattgatgagtgat
ccaaactcacccattattgatttctatcccacagattttgaggttgacatgaatggaaag
agatattcttggcagggtgttgctaagcttccttttatagaggaagatcgcttgcttgct
gaaattaagaatgtacaacatactttgacgaaggaagaaattcggcggaatagtgtgatg
tttgaaatgctttttgttaatgtgtcacatcctctctctccatatatgttctctcttagc
aatcaacatggacaattgtcagaaaaagaaaaagctgaaataaaagaaaaaattgatcct
gttgccagtggtggaatgaatggatatctgtcactttgtaatggggatccatgtccgcct
gtcttcaggtctcccatcaatggattggaggatataatggacaatcaagtcatttgtaca
atatacaaacttccagatgcccacaaacacattactcaaccaccaccaggtgttatattc
cctaaaaagactgttaccatcggtgatttgaagcctccacctgctctgtggcatgaagat
actggcaggagaccgcttgaaaatggaagcaccacatccaggcaaaaccccccaggatct
tactctggcaaacaacttggcgaggccgctcatcgtctagtcatcaatagcttacaggcg
cggactggacgagagcacgacaacatggagcaaagaaggcatcctcatccgtcatcacat
cctccacattcacccaactcctttccatattcggatggacgacaacttccatttgctgct
ggagaggaacgacatgccattggtcagtcgcaacggtacaatgttgtttctacctcttca
agttatcgatacgagagatccgaaaaccatccattcaaacgaaatgaacatcatagtagt
caccatcaatttgaaagaaacgaatatggtgttaggaatactacacattacgagcaaaga
gttccggctcaaagccacccacagtatggcacgtcggcatacccagtcgcgacgagaaat
gtcatccaacagcccgttcatggaagcgtccctgctcggtctggatatggcggcttcaac
gcatacggagttcggccgcaatggaatccacaatatgatccaaggagaggaccgccttcg
catcaggctcagtttgaaagaacgaacacgaacccacaaccgacgaattatagtaataat
agatatgttgtgttagatcgaggcttgaacaaaaggcctcggccaccaccgccgcccggt
tatggccattattag
DBGET
integrated database retrieval system
