Peptoniphilus equinus: O6R05_06315
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Entry
O6R05_06315 CDS
T09392
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pequ
Peptoniphilus equinus
Pathway
pequ03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pequ00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O6R05_06315 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pequ03019
]
O6R05_06315 (rnr)
03016 Transfer RNA biogenesis [BR:
pequ03016
]
O6R05_06315 (rnr)
Enzymes [BR:
pequ01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O6R05_06315 (rnr)
Messenger RNA biogenesis [BR:
pequ03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O6R05_06315 (rnr)
Transfer RNA biogenesis [BR:
pequ03016
]
Prokaryotic type
tRNA degradation factors
O6R05_06315 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
CSD
AlkZ-rel
OB_RNR_1st
PCB_OB
DUF5830
HalOD1
Motif
Other DBs
NCBI-ProteinID:
WBW49608
UniProt:
A0ABY7QS38
LinkDB
All DBs
Position
complement(1300028..1302151)
Genome browser
AA seq
707 aa
AA seq
DB search
MIIDKVYDKIKSSKPMTLDKLRKKFEIGKNQRKDFDKILRTLEKDGRIYFDGNVYIPIDG
ERIRRGKLQGNARGFGFLLQADQDVFIAAKNMNSALHGDEVIVRVLDPHEGSRGDSIEGK
VLKVVDRANQTIVGTFQNKKNFGFVVPDDDKIAFDIFIPKKHFLAAKDGQKVVAKVKTWP
EGNRKPEGRIVEILGYKGEKGVDILSIARDMDIPTDFSKAAKLAAKDMPQSVRDKDIQGR
EDLRGLRTFTIDGADSKDFDDAVSIETWDGKTRLWVHIADVSHYVKEGDEIDKEAYKRGN
SYYLIDKVIPMLPKELSNVICSLNEGVDRLAFTVAIDFNPAGDILDHAIMNSVIKSDRRL
VYTHVSDFLEHGTAHPTLQGLEEDLKAMEALAEKLRAKRYRRGAIDFDFAETAITVDDEG
KPVDIAKSERRVANKLIEEFMLVTNEVVAKDFYDKKVPFLYRIHETPDGERIEGLNKMLR
HLGLSVKGEDLEPKLIQELIERVKGKEEALFVSTIVLRSLMKAKYSETLDIHFGLAAKYY
SHFTSPIRRYSDLTIHRIMKDQLRGKLTDGRKRYLENTLPHVAEHVSAMERVAQEAERTV
QDIKIAEYMEERIGATYPAVITGVTGFGLFAQLENTIEGLISYQDLDDYYEFDEDSFRAV
GRSTGKIYNVGDKVMIKVVGANTTKGTVDFVITEDLVDISYGGDVHE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgatcattgataaagtgtacgacaaaatcaaatcctccaagccgatgactttggacaaa
ctgcgtaaaaagtttgaaataggcaagaaccaacgcaaagattttgataagattctacga
actttggaaaaagacggacggatttattttgatggcaatgtgtacattcccattgatggt
gagcgtatccgccgtggcaagcttcagggcaatgcccgaggatttggctttcttcttcag
gcggatcaggacgtttttatcgcggcgaagaatatgaactccgcccttcatggggatgag
gtcatcgtacgtgtgttggatcctcatgaggggtcacgaggcgactccattgaaggcaag
gttctcaaagttgtggatcgggctaaccaaaccatcgtcggcacttttcagaataagaaa
aacttcggttttgtggtacctgatgatgacaaaatcgcttttgatattttcattcctaaa
aagcactttttagctgcaaaggacggtcaaaaagttgtcgccaaggtgaagacctggcct
gaaggcaatcgaaagccggaagggcgcattgtggaaattctgggctataaaggggaaaag
ggcgtagacattctctccattgctcgtgacatggatatcccgacggatttttccaaggcg
gcgaagttggcggcaaaagatatgccccagtcggtacgcgataaagacatacaagggcgg
gaagacttgcgaggtctgcgtacctttaccattgacggggcggattccaaggactttgac
gatgcggtgagcattgaaacatgggatgggaaaacacgtctgtgggtgcatattgccgat
gtgagccattatgtcaaagaaggtgacgagattgataaggaagcctataaacgcggcaac
tcgtactatctcattgacaaggtcatcccgatgcttccgaaagaactctccaacgttatc
tgctcgttgaatgaaggggtggatcgtctggcttttactgtggccatcgattttaatcct
gccggggatattctggaccatgccattatgaactcggtcatcaagtccgaccggcgtctc
gtctatacccatgtcagcgactttttggaacacgggacggcacatcctacccttcaaggt
ttggaagaggatttgaaggcgatggaggcgctcgctgaaaaacttagagctaagcgttat
cgccgcggcgccattgattttgattttgctgaaaccgctattaccgttgacgatgaaggc
aaacctgtggacattgcgaaaagcgaacggcgcgttgccaacaaactcattgaagaattt
atgctggtgaccaatgaagtggtggcgaaggacttttatgataagaaagtaccgttcctc
tatcggattcacgagacgccggacggggaacgtattgaaggtttgaacaagatgcttcgt
catttgggtctttcggtgaaaggtgaggatcttgaaccgaaattgattcaagagctgatt
gaacgggttaaaggtaaagaggaagcgctttttgtgtccacgatcgtgctgcggtcgctg
atgaaggccaagtactccgagacgctggacatccacttcggtcttgcggccaagtattat
tctcacttcacttcaccgattcgtcgctatagcgatctgaccattcataggattatgaaa
gaccaacttcgaggcaaactgaccgatggacgcaagcgatatttggaaaacacgttgccg
cacgtggcggagcatgtctctgccatggaacgggtggctcaggaagctgagcgtaccgtc
caggatatcaaaattgccgagtatatggaagagcgcatcggtgcgacgtacccggcagtc
atcaccggggtcaccgggttcggactctttgcacaacttgaaaataccattgaaggcttg
atttcgtatcaggatttggatgattattacgagtttgacgaagatagtttccgtgctgtc
gggcgttctaccggaaagatttataacgtgggcgacaaggtgatgatcaaggtagtggga
gccaatacgactaagggcacagttgattttgtcatcacagaagatctggtcgatatttcc
tatggaggtgatgtgcatgagtga
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