Peptoniphilus equinus: O6R05_07300
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Entry
O6R05_07300 CDS
T09392
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pequ
Peptoniphilus equinus
Pathway
pequ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pequ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O6R05_07300 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pequ03021
]
O6R05_07300 (rpoC)
03400 DNA repair and recombination proteins [BR:
pequ03400
]
O6R05_07300 (rpoC)
Enzymes [BR:
pequ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O6R05_07300 (rpoC)
Transcription machinery [BR:
pequ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O6R05_07300 (rpoC)
DNA repair and recombination proteins [BR:
pequ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O6R05_07300 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WBW49801
UniProt:
A0ABY7QTV4
LinkDB
All DBs
Position
complement(1491230..1494835)
Genome browser
AA seq
1201 aa
AA seq
DB search
MSEHELFHSIKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
SCGKYKRVRYKGVVCEKCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRELEKVLYFAAYIVIKVDDKDCGLYEKQLLTEIEYREYKAQYGDGFTAKMGAEAIREL
LEAIDLKRESELLSAELETAKGQKKVRVSRRLEVIEAFLQSENRPEWMILEAIPVIPPDI
RPMVQLDGGRFATSDLNDLYRRIINRNNRLKKLLDINAPDIIVRNEKRMLQEAVDALIDN
GRRGRPVTGPGNRALKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKFYQCGLP
KMMALELFKPFVMRELVAGGYAHNIKSAKRMVERTTSEVWDVLEEVIKDHPVLLNRAPTL
HRLGIQAFEPVLVEGKAIKLHPLSCTAYNADFDGDQMAVHLPLSTEAQTEARLLMLSTNN
ILGLKDGKPIATPTQDMILGSYYLTLNQENPQKGDGMIFQDEDEMMQAYYTGFLHLQAHV
GVRRYAGENDRWGKIVHSTVGRFIMNSFIPQDLGFVNRDIDKYSLEVDRVIDKKTLGKII
EKTYKKHGNIRTAQLLDDIKANGYHYSTIGAISISMGDVEVPEVKPEILDRAQAQVNKYE
KAFRRGLISDEERYEKVIEIWNNATDELTDEVMAGFDRLNNIYIMADSGARGSKNQIRQL
AGMRGLMASPSGRTIEVPITSNFREGLSVLEFYMSAHGSRKGLADTALRTADSGYLTRRL
VDVAQQVIIKEEDCGTDEYLVARAFKDGKELIESLKDRIEGRYAFEDIVHPQTGEVIVKG
NTQISDDEAEVIEAAGIEEVKVRTVLGCKAKTGVCAHCYGRNLATGNNVDIGEAVGVIAA
QSIGEPGTQLTMRTFHTGGVASAADITQGLPRVEELFEARKPKGLAVIAEIAGTVEIKEN
NRKREVVVTGDNGEKETYTIVYGARLKVKNGDRVEKGQELTQGSVYPQDLLRVMGPKGVE
EYIVKEVQRVYRLQGVDINDKHIEIIVRQMLSKVKIEDAGDSDFLPGSLVDIVEFKTRNK
ELEEEGAVPATGNVNLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKEDKLHGLKEN
IIIGQLIPAGTGVRQNKRVQLAVSDKLKENKKLLENSEFISEKDIENATYSEPEDVELIT
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaacacgaattatttcactcaattaaaataggtttagcttctccggaaaagatc
agatcctggtcttatggggaggtcaaaaaaccggaaaccattaactatagaacactgaag
ccggaaaaagaagggctgttctgtgagaaaatcttcggacctaccaaggactgggagtgt
agttgcggtaagtacaaacgggtgcgctataagggcgtagtctgtgaaaagtgcggtgtg
gaagtcaccaaggccaaggtcagaagagagcgcatgggtcacatcgagctggcggcgccg
gtctctcacatctggtatttcaaaggcattccgtctcgaatgggtcttgttttagatatg
agcccgagagaactggaaaaagttctctactttgccgcctacattgtcatcaaagtggac
gataaagactgcggtctctatgaaaagcaactgcttactgaaattgaataccgggagtac
aaagctcagtacggtgacggctttacggcaaagatgggcgccgaagccattcgtgagctc
cttgaggccattgatctgaagcgagagagcgaactgctcagtgcagaactcgaaacggcc
aagggacaaaagaaggttcgcgtatcccgtcgtctggaagtcatcgaagccttcctgcaa
tcggaaaaccgtccggaatggatgattcttgaagccattcctgttattccgccggacatt
cgtcctatggtgcagctggacggcggacggtttgctacttcggacttaaatgacctctat
cgacgtattatcaacagaaataaccgtctgaaaaagcttctggacatcaatgcgccggac
atcatcgtgcgcaatgaaaagcggatgctccaagaggcggtggatgcacttattgacaac
ggacgtcgtgggcgtcctgtcacaggaccggggaatcgtgccctaaaatctctctctgaa
atgcttaagggtaagcaaggacgtttccgtcaaaaccttcttggcaagcgtgtcgattac
tccgggcgttccgttatcgttgtcggaccggatctgaaattctatcagtgcgggttgccg
aagatgatggcgttggaacttttcaaaccgtttgtcatgagagagttggtcgcagggggc
tatgctcataatattaagagcgctaagcgcatggtggaacgcactacctccgaagtgtgg
gatgtcttggaagaagttatcaaagaccatcctgttctcttgaaccgtgcaccgaccctg
caccgtttggggattcaagctttcgaacctgtccttgtagagggtaaggcgattaaactt
catccactctcttgtacggcgtataacgcagactttgacggggaccaaatggcggttcac
ttaccgctttccacagaagcacaaacagaagcgcgtctgctcatgctctcgaccaacaac
atcttaggtcttaaagatggtaagccgattgccacgccgactcaggatatgattctcggt
tcctactatttgacattgaatcaggaaaatccgcaaaaaggcgacggcatgattttccaa
gatgaagatgaaatgatgcaggcctactacactggcttccttcacttgcaagctcatgtc
ggagtgcgtcgttacgccggtgagaatgaccgttggggtaagattgtacattctacggtg
ggacggttcatcatgaatagcttcatcccgcaagacctcggttttgtcaatcgggatatt
gataaatactctcttgaagtggatcgggttatcgacaagaaaaccttgggcaagattatt
gaaaaaacatataaaaagcacggtaacattcgtactgcccagcttctggacgatatcaaa
gccaacggctatcactactccaccattggtgcgatttccatctccatgggtgacgttgaa
gtgccagaagtgaaaccggaaattttggatcgtgcacaggctcaagtgaacaaatacgaa
aaagctttccgtcgcggtctcatttcggatgaagaacgctatgaaaaagttattgaaatc
tggaacaatgccacggacgaactgaccgatgaagttatggccggctttgaccgactcaac
aacatctacatcatggccgactccggagctcgtggttccaaaaaccaaattcgtcagctg
gccgggatgcgtggtctgatggcttcgccatcagggcggaccatcgaagttcctatcaca
tcgaacttccgtgaaggtctgagcgtactggaattttatatgtcggctcacggttctcgt
aagggacttgcagatactgcactgcgtacagccgactccggatatctaactcgacgtttg
gtggatgtggcgcaacaagttatcatcaaagaagaagactgcgggacggatgaatatctg
gtagcccgtgcctttaaagatggcaaggaacttattgaaagcttaaaagaccgtatcgaa
ggacgttatgcttttgaggatattgtacatccgcaaaccggcgaggttatcgtcaaaggt
aatactcaaatttccgatgatgaagccgaagtcattgaagcggcgggtattgaagaagtt
aaagttcgtaccgtgctcggctgtaaagccaagaccggcgtctgtgcacactgctacggc
agaaatctggctaccggcaataatgtcgatatcggcgaagcggtgggtgtcatcgccgct
cagtccatcggtgaaccggggacacagcttaccatgcgtactttccacaccggcggggtt
gcctcggcggcggacattacccaaggtttgccgcgggttgaagaactcttcgaagcgcgt
aaaccaaagggacttgctgtcattgcggaaattgcagggactgttgaaattaaagaaaac
aacagaaaacgcgaagttgttgtcactggtgataacggagaaaaggaaacgtacaccatt
gtctatggcgcgcgtctgaaggttaagaatggtgaccgggtagaaaaaggccaagagctc
acccaagggtccgtctatccccaagaccttcttcgtgtcatgggaccgaagggcgttgaa
gaatacatcgtcaaggaagttcaacgagtttatcgtctccaaggtgtagacattaatgat
aaacacattgaaattattgtgcgtcagatgctgtccaaagttaaaattgaagatgccggc
gacagtgatttcttgccgggatctctggtggatatcgtcgaatttaagacgagaaacaag
gaacttgaagaagaaggcgcagtaccggcaacgggtaatgtcaacttgctcgggattacc
aaggcgtcgcttgctacggattccttcttgtctgccgcgtctttccaagaaacaacccgt
gtactcaccgacgccgcaatcaaaggcaaagaggacaagcttcacggcttgaaagaaaat
attattatcggtcagttgattccagccggtaccggtgtgcgacaaaataaacgcgtgcag
ttggctgtgagcgacaagcttaaagaaaacaagaagcttctggaaaattcagagtttatc
tctgagaaggatattgagaatgccacatattccgaaccggaagatgtagaactgatcaca
gaataa
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