Pantoea eucrina: LAC65_00775
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Entry
LAC65_00775 CDS
T07862
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
per
Pantoea eucrina
Pathway
per03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
per00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAC65_00775 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
per03021
]
LAC65_00775 (rpoC)
03400 DNA repair and recombination proteins [BR:
per03400
]
LAC65_00775 (rpoC)
Enzymes [BR:
per01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAC65_00775 (rpoC)
Transcription machinery [BR:
per03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAC65_00775 (rpoC)
DNA repair and recombination proteins [BR:
per03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAC65_00775 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
UBB13411
LinkDB
All DBs
Position
168797..173020
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYAKNEQEELVAKTSLIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVVEENSVDVIKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAVMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIMSAGSSEFLEGEQAEVSRIKISNRDLETAGKIGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
APQVTADEASASLAELLNAGLGGNNDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaagccagagcgtgacggtcttttctgtgcccgt
atcttcggaccggttaaagactacgagtgcctgtgcggtaagtacaagcgcctgaagcat
cgcggtgttatctgcgagaagtgcggcgttgaagtgacgcagaccaaagtacgccgtgag
cgtatgggtcacatcgagctggcttcacctactgcacacatctggttcctgaagtcgctg
ccgtcccgcatcggcctgctgctggatatgccactgcgtgacattgagcgtgtcctctac
ttcgaatcctacgtggttatcgaaggcggcatgaccaacctggaaaaacgtcagatcctg
acggaagagcagtatcttgacgcgctggaagagttcggtgacgaatttgacgcgaagatg
ggtgcggaagcgatccaggcactgctgaaaaatatggatctggagcaggagtgtgagcag
ctgcgcgaagagctgaacgagactaactctgagaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gctacgtcagatctgaacgatctctatcgtcgcgtgatcaaccgtaataaccgtctgaag
cgtctgctggatttggctgcgccagatatcatcgtgcgtaacgaaaagcgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgccatcaccggctctaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgcgttgactactccggtcgttcggttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggtcttgctaccaccatcaaagctgccaagaaaatg
gttgagcgtgaagaagcggttgtctgggatatcctggacgaagttatccgcgaacacccg
gtgctgctgaaccgtgcgccaacgctgcaccgtctcggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgtgcggcctataacgccgac
ttcgatggtgaccagatggcggtacacgtaccgctgacgctggaagctcagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcgccagcgaacggtgagccaatcatc
gttccttcacaggacgttgttctgggtctgtactatatgacccgcgacaaagtaaacgcc
aaaggcgaaggcatggtgctgaccggcccgaaagaagctgagcgtgtttaccgcgctggc
ctggctgagctgcacgcccgcgttaaagtgcgtattacagaatatgcgaaaaacgaacag
gaagagctcgttgcgaaaaccagcctgatcgacacgaccattggccgtgcgattctgtgg
atgatcgtaccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcctatgcagcccgttcaggtgcatcagtcggt
atcgacgatatggttattccggcgaagaaagcggaaatcatcgctgaagctgaagctgaa
gtggctgaaattcaggagcagttccagtctggtctggttacggcgggtgaacgttataac
aaagtcatcgatatctgggccgctgccaacgaacgcgtctctaaagcgatgatggataac
ctgcagacggaaaccgttatcaaccgtaacggcgaagaagagcagcaggtctcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgagacgcctatcacg
gcaaacttccgtgaaggcctgaacgtactgcagtacttcatctcaacgcacggtgcgcgt
aaaggtctggccgataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgttaccgaagatgactgtggcacgttcgaaggcatc
atgatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgttctgaagccaggcactgctgacatcctgatcccgcgt
aatacgctgatcgatgagcactggtgtgacgtggtggaagagaactccgttgacgttatc
aaagtgcgttcagtagtaagctgtgaaaccgacttcggtgtgtgtgcacactgctacggt
cgcgatctggctcgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtactcagctgacaatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcattcaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtcagtaaccaactcctccgggaagctggttatcgtttcacgtaacgtt
gagctgaagatgatcgacgagttcggtcgtaccaaagagagctataaagtgccttacggt
gcggtgatggcgaaaggtgatggtgagcaggttgctgcaggcgaaaccgtagcaaactgg
gatccgcacaccatgccggtaatcaccgaagtgggtggtttcatccgcttcaccgacatg
atcgacggtcagaccattacccgtcagactgacgaccttaccggtctgtcatcgctggtg
gtactggattccgcagagcgtactgctggcggtaaagacctgcgtccggcgctgaaaatt
gttgatgccaacggcaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccaggtaaagcgattgtgcagctggaagatggcgtgaagatcagttcgggtgatacc
ctggcgcgtgttccgcaggaatctggcggtaccaaggacattaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccagctattctggcggagatcagc
ggtatcatctccttcggtaaagagaccaaaggcaagcgtcgtctggtgatcacaccggtt
gatggcagcgatccgtacgaagagatgattccaaagtggcgtcagcttaacgtatttgaa
ggtgagcgcgtggaacgcggtgacgtcgtatctgacggcccggaatcaccacacgacatc
ctgcgtctgcgtggcgttcatgcggtaacgcgttatatcactaacgaagtgcaggaagtt
taccgcctgcagggcgttaagattaacgataagcacatcgaagtcatcgtacgtcagatg
ctgcgtaaagcgaccatcatgagcgcaggtagctcggagttccttgaaggcgagcaggca
gaagtctcccgcatcaagatctccaaccgcgatctggagaccgctggcaaaatcggcgca
acctatgcgcgcgatctgctgggtattaccaaagcgtctctggcaaccgagtcgttcatc
tctgcagcctcgttccaggagaccacgcgtgtcctgaccgaagccgcagtagcaggcaag
cgcgatgaactgcgcggcctgaaagagaacgttattgtgggtcgtctgatcccggctggt
accggttatgcttaccatcaggatcgtatgcgtcgccgtcaggcgggtgaagcgccggtt
gcaccgcaggtgactgcggatgaagcctctgcaagcctggctgagctgctgaacgctggt
ctgggtggcaacaacgacgagtaa
DBGET
integrated database retrieval system
