Pantoea eucrina: LAC65_01790
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Entry
LAC65_01790 CDS
T07862
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
per
Pantoea eucrina
Pathway
per03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
per00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC65_01790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
per03019
]
LAC65_01790
03009 Ribosome biogenesis [BR:
per03009
]
LAC65_01790
Enzymes [BR:
per01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAC65_01790
Messenger RNA biogenesis [BR:
per03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC65_01790
Ribosome biogenesis [BR:
per03009
]
Prokaryotic type
rRNA helicases
LAC65_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBB13601
LinkDB
All DBs
Position
392804..394705
Genome browser
AA seq
633 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNVDPSVRAPQILVLAPTRELAVQVAEAMTEFSKHMRNVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWTAYGRKTEALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLSKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPRPQRREFRDRDDRADRPRRDRDSRGESRDGDRPRRERRD
VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVL
QHFTRTRILNKPMNMQLLGDAQPHERTERRSGGRDFGGERRSSAPRGDSAPRGEGAPRRF
SERREGGREGGRFSREAGRGPRRDEGTSRRRDA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgatctgggcctgaacgccgacatcctcgaatct
ctgaacggtatgggctacgttaagccttccccaatccaggctgagtgtattcctcacctg
ctggcgggccgcgatgttctgggtatggcgcagaccggtagtggtaaaaccgcggcgttc
tcactgccgctgttaaacaacgttgatccttctgtccgcgcaccacagattctggtgctg
gcaccgacccgcgaactggcggtgcaggtggctgaagcgatgacagaattctctaaacat
atgcgtaacgtcaacgtcgtggccctgtatggcggccagcgttatgacgtacagctgcgc
gccctgcgtcagggaccacagatcgttgtgggtaccccgggccgcctgctggaccacctg
aagcgtggtactctggacctctctaacctgcgtggtctggttctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgcactgttctctgcaactatgccagaagcgattcgtcgtattaccaaacgc
ttcatgaaagatccacaggaagtgcgtatccagtcaagcgtgaccacgcgtccggatatt
tcacagtcttactggaccgcttacggccgtaaaactgaagcgctggtgcgtttcctggaa
gcagaagactttgatgcagccatcattttcgtgcgtaccaaaaacgcaacgctggaagtg
gctgaagccttagagcgcagcggctacaacagtgccgcgctgaacggcgacatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggccgtcttgatatcctgattgca
accgacgttgcggcgcgcggtctggacgttgagcgtatcagcctggttgttaactacgat
atcccgatggatgcggagtcttatgttcaccgtatcggccgtaccggtcgtgcgggccgc
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacattgaa
cgcaccatgaagctgactattccggaagtagaactgccaaacgcagagctgctgggtgag
cgtcgtctggccaaatttgcagcaaaagtacagcagcagctggaaagcagcgatctggat
cagtatcgcgcgctgctgagcaaaatgcagccggaagaagagctagatatcgaaacgctg
gcggctgccctgctgaaaatggctcagggtgaacgtccactgatcgtaccggctgacgcg
ccgcgtccgcagcgtcgtgagttccgcgatcgtgatgaccgcgctgaccgtccgcgtcgt
gaccgcgacagccgtggtgagagccgtgatggcgatcgtccacgtcgtgagcgtcgtgac
gttggcgacatgcagctttaccgcattgaagtgggtcgcgatgacggcgttgaagttcgc
cacattgtgggtgctatcgctaacgaaggcgatatcagcagccgctacattggtaacatc
aagctgtttggcacgcactccaccatcgaactgccaaaaggcatgccgggtgaagttctg
cagcacttcacgcgcacgcgtattctgaacaagccgatgaatatgcagctgctgggtgat
gcacagccgcacgagcgtactgagcgccgcagtggcggtcgtgacttcggtggcgagcgt
cgcagcagcgcaccgcgtggcgacagtgcaccacgtggtgaaggcgcaccgcgtcgcttc
tccgagcgtcgtgaaggtggccgcgaaggcggacgctttagccgcgaagcgggccgtggc
ccacgtcgcgacgaaggcacctcacgtcgtcgtgatgcataa
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