Pantoea eucrina: LAC65_04905
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Entry
LAC65_04905 CDS
T07862
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
per
Pantoea eucrina
Pathway
per03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
per00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAC65_04905 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
per03019
]
LAC65_04905 (rhlE)
Enzymes [BR:
per01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAC65_04905 (rhlE)
Messenger RNA biogenesis [BR:
per03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAC65_04905 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
HEM4
AAA_22
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
UBB14165
LinkDB
All DBs
Position
1043962..1045341
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AA seq
459 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLSENPAAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGSIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIALPGFEPDPSIKAEPIQNGRQQQPRGRGQGQGGNAGRAGGGQRQGNGAA
RPQSESRAPRRQGGNGPAAGHAGKPARSRRPAAKGNGNA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgactctctcggcttgaatgccgatattttgcgtgcggtagcagaacagggc
tatcgcgaaccgacgccaattcagcgtcaggcaattcctgtggtactggctggccgcgac
ctgctggcgagtgcccagaccggtaccggtaagaccgccggttttacgctgcctctgctg
cagcgtctttctgaaaaccctgccgctgcacgcggccgccgcccggtgcgcgcgctgatc
ctgacgccaacgcgtgagctggccgcacaggtcggtgagaacgtgcgcgaatacagccag
tacctgaacatgcgttctctggtggtatttggtggcgtcagcattaatccgcagatgatg
aaactgcgcggcggcgttgacgtactggtggcaacgccaggccgtctgctggatctggcg
catcagaatgcggttgatctctcgcaggtagaaattctggtgctggatgaagccgaccgc
atgctcgatatgggctttattcacgatatccgtcgcgtcctggcgaagctgccggcgaag
cgtcagaacctgctgttctcagcaaccttctccgacgaaatcaaaacgctggcagaaaaa
ctgctgacgaacccggagcaggtcgaagttgcccgccgcaacaccgcgtcagagcaggtg
tcgcagcaggtgcactttgtggataaaaagcgcaagcgggaactgctgtcgctgatgatt
ggccgtgataactggcagcaggtactggtgtttacccgtaccaagcacggtgccaaccat
ctggctgagcagctgaataaagatggcatcaccgcggcggctatccacggtaacaagagt
cagggcgcccgtacccgcgcgctggctgattttaaatcgggcagcattcgcgtgctggtc
gctaccgatatcgccgcacgcggtctggatatcgaagagctgccgcacgtagtgaactat
gagctgccaaacgtagcggaagattacgtacaccgtatcggccgtaccggacgcgcggcg
gcaaccggtgccgcgctgtcgctggtctgcgttgatgaacacaagctgctgcgtgatatc
gaacgactcctgaagcgtgagatcccgcgcattgcgctgccgggctttgagccggatccg
agcattaaagcggagccgatccagaatggtcgccagcagcagccgcgcggtcgcggtcag
gggcagggcggcaacgccggtcgcgccggcggcggtcagcgtcagggcaacggtgcggca
cgtccgcagagtgagtcgcgcgcgccgcgtcgtcagggcggtaatggcccggcggcaggt
cacgcgggcaaaccggcacgttcacgtcgtccggctgccaaaggcaacgggaacgcataa
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