Pantoea eucrina: LAC65_06215
Help
Entry
LAC65_06215 CDS
T07862
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
per
Pantoea eucrina
Pathway
per03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
per00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAC65_06215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
per03400
]
LAC65_06215 (mfd)
Enzymes [BR:
per01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAC65_06215 (mfd)
DNA repair and recombination proteins [BR:
per03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAC65_06215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UBB14402
LinkDB
All DBs
Position
complement(1325813..1329265)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSEQHRYTLPAKAGDHRQLGQLVGAAQAVECASITERHQGPVLMITPDMQSALRLQEEIR
QFTDLPVINLPDWETLPYDSFSPHQDIISARLSTLYQLPMLARGMLILPVNTLMQRVCPH
SFLHGHALVMQQGQKLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDSQRTLESVDAINLLPAHEFPTDKAAIELFRTRWREIFDVRRE
PEHIYQQVSKGTLPSGIEYWQPLFFEQPLPTLFSYLPASTLVLNCGDLPGSADRFWQDAH
ARFENRRIDPMRPLLEPATLWLRPDALLSELKAWPRMQLTAETLPEKAANTNLAYEPLPE
LTVQAQAKAPLDLLRQFLEQFSGQVIFSVESEGRRESLQELLARIKLRPQPVEHFSEAAA
QPYSLMIGASERGFIDTLRDRALICESDLLGERVSRRRQDNRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGLTTLEAGGIVAEYLMLSYAGDAKLYVPVSSLHLISRYAGGADENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGYAFKHDREQYRLFCEGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENTKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQVLEQASEGKIDILIGTHKLLMSDLKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLADLVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMESIGFTLYMELLENAVDALKAGREPSLEDLTSNQTEIELRMPALLPDDFIPDV
STRLSLYKRVASAADEQDLAELRVEMIDRFGKLPDAARNLLDIAALRLAARELGVRKIEA
SDKGGFFEFAPQNQIDPGWLISLLQKDPAQWKLDGPTRLRFTRDLAERKLRMEWVQEFIT
ELAKHRLPAG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagcatcgttataccctgcctgccaaagcaggagaccatcgtcagctcggc
cagctggtcggcgccgcgcaggcggttgagtgcgccagtatcaccgaacgccatcagggt
ccggtgttgatgatcaccccggatatgcagtccgcgctgcggctgcaggaggagatccgt
cagtttaccgacctgccggtgattaatctgccggactgggaaacgctgccctacgacagc
ttttcgccccatcaggatattatttcagcgcgcctctctacgctttaccagctgccgatg
ctggctcgcggcatgctgattctgccggtcaatacgctgatgcagcgcgtctgcccgcac
agcttcctgcacgggcacgcgctggtgatgcagcagggacaaaaactgtcccgcgacgcg
ctgcgcgatcagctggaacaggcgggttaccgccacgtcgatcaggtgatggagcatggc
gaatacgccacgcgcggtgccctgctcgatctcttcccgatgggcagcgaccagccctat
cgcatcgacttttttgatgatgaaattgacagcctgcgcctgttcgacgtcgacagccag
cgcacgctggagtcagtggatgcgattaatctcctgccggcgcacgaatttcccactgat
aaagcggcgattgagctgtttcgcacccgctggcgcgagattttcgacgtgcgccgcgag
ccggagcatatctatcagcaggtcagtaaaggcacgctgccctccggcatcgaatactgg
cagccgctgttttttgagcagccgctgcccacgctgttcagctacctgcccgccagcacg
ctggtgctgaactgcggcgatctgcctggcagcgcggatcgcttctggcaggatgcgcac
gcccgctttgaaaaccggcgcatcgacccgatgcgcccgctgctggagccggccacgctc
tggctgcggcccgatgcgctgctcagcgaactgaaagcctggccgcgcatgcagctcacg
gcagaaacgctgccggaaaaagccgccaataccaacctggcctatgaaccgctgccggag
cttaccgtgcaggcccaggcgaaagccccactcgacctgctgcgccagtttctggagcag
ttcagcggccaggtgattttctcggtagagagcgaaggccgccgggaaagcctgcaggag
ctgctggcgcgcattaagctccgccctcagccggttgaacacttcagcgaagcggcggct
cagccttacagcctgatgattggcgccagcgagcgtggctttatcgatacgctgcgcgat
cgcgcgctgatctgtgaaagcgatctgctgggcgagcgcgtcagccgtcgccggcaggat
aatcgccgcaccatcaatccggacgtgctgatccgcaacctggcggagctgcatccgggg
cagccggtggtgcatctggagcacggcgtcggacgttatatcggactcaccacactggag
gctggcgggattgtggcggagtacctgatgctctcctacgccggcgacgccaagctttat
gtaccggtctcctcactgcatctgatcagccgctacgccggtggcgccgatgaaaatgcg
ccgctgcacaagctgggcagcgacgcctggtcacgcgcgcggcagaaagcggcggaaaag
gtacgcgacgtggcggcggagctgctggatatctacgcccagcgtgctgcgaaaagcggc
tacgcctttaagcacgatcgcgagcagtaccggctgttctgcgagggcttcccgtttgaa
accacgccggaccaggcgcaggcaattaacgccgtgctgagtgatatgtgccagccgctg
gccatggatcgcctggtgtgtggcgacgtgggctttggtaaaacggaagtggcgatgcgc
gcggcgtttctggccgtggagaacaccaagcaggtggcggtactggttcccaccaccctg
ctggcgcagcagcactatgacaacttccgcgatcgctttgccaactggccggtgcgtatc
gagatgctgtcacgcttccgcagcgcgaaagagcaggcacaggtgctggagcaggcgagc
gaaggcaaaatcgatattctgatcggcacgcataaactgctgatgagcgatctcaaatgg
cgcgacctcgggctgctgattgtggatgaagagcaccgctttggcgtgcggcacaaagag
cgcatcaaggcgatgcgcgccgacgtcgatatcctgacgctgaccgctacgcctattccg
cgtacgctgaatatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgcct
gcccgtcgcctggcggtgaaaacctttgtgcgcgaatatgacagcctggtggtgcgcgaa
gcgattctgcgcgaggtgctgcgcggtggtcaggtttactacctctataacgacgtggaa
aacattgagaaagcggcgcagcggctggcggatctggtgccggaagcgcgtatcgcgatt
ggtcacggccagatgcgcgagcgcgatctggagcgggtaatgaacgatttccatcatcag
cgttttaatgtactggtctgtaccaccatcattgaaaccggtatcgatgtacccagcgcc
aacaccatcatcattgaacgtgccgatcactttggtctggcgcagctgcaccagctgcgc
gggcgcgttggccgctcgcaccaccaggcctacgcctggctgctgacaccgcacccgaaa
gcgatgaccaccgatgcccagaagcggctggaggcgatcgcctcgctggaagatttaggc
gccggctttgcgctggcgacgcacgatcttgaaatccgcggcgccggtgagctgctgggc
gaggatcagagcggtcagatggagagcatcggctttacgctctatatggagctgctggaa
aatgcggtggatgccctgaaagcgggacgcgagccgtcactggaagatctcaccagcaat
cagaccgagattgaactgcggatgccggcgctgctgcccgacgattttattcccgatgtc
agcacccgtctttcactctataaacgggttgccagcgccgccgacgagcaggatctggct
gaactgcgggtagagatgattgaccgctttggcaaactgcctgacgccgcgcgcaatctg
ctggatatcgccgcgctgcgcctggccgcgcgcgagctgggcgtgcgcaaaattgaagcc
agtgacaaaggcggcttctttgagtttgccccgcagaaccagatcgatcccggctggctg
attagcctgctgcagaaagatccggcacagtggaagctggatggcccgacgcggctgcgc
ttcacgcgcgatctggctgaacgcaagctgcgcatggagtgggttcaggagtttatcacc
gaactggcaaagcaccggctgccggcgggctga
DBGET
integrated database retrieval system
