Peredibacter sp. HCB2-198: ACJVC5_01355
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Entry
ACJVC5_01355 CDS
T11927
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
perd Peredibacter sp. HCB2-198
Pathway
perd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
perd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJVC5_01355 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
perd03021
]
ACJVC5_01355 (rho)
03019 Messenger RNA biogenesis [BR:
perd03019
]
ACJVC5_01355 (rho)
Transcription machinery [BR:
perd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACJVC5_01355 (rho)
Messenger RNA biogenesis [BR:
perd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACJVC5_01355 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
Spore_III_AA
AAA
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XLJ79431
LinkDB
All DBs
Position
complement(253283..254851)
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AA seq
522 aa
AA seq
DB search
MTTKKPRKSVQDDQTETVNAETETPTEVEAKEAASAREPREQREPREQRPPRQDRGDQGP
RGRHPQNRGGDRGEHRGEPRQRYQDDQPRHSAPTEQSNRVPSNPGDRMHLSALREKDIEE
LTRMAEEAQIENAAGLKKHELIFSLLTKKSKDNEEIFGDGVLEILPDGFGFLRSPSYNYL
PGADDIYVSPSQIRRFGLRTGDTIEGQIRTPKEGERYFALLKVNHINFRDPEAHRSTVLF
DNLTPLYPNKKIQLESKPTNYSTRVIDLFVPQGFGQRCLIVAPPKAGKTMLMQDIANSIS
DNHPEAKLIVLLIDERPEEVTDMKRNVRAEVVSSTFDEPATRHVQVAEMVIEKAKRLVEA
KQHVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGAARNIENGGSLTII
ATALIDTGSRMDEVIFEEFKGTGNSEIQLDRKLMEKRVFPCLDINKSSTRKEDLLMADKD
LQRVFVLRRVLNPMNTMDSMEFILERMKDTKTNIAFLDKMNG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaaaaaacctagaaaatccgttcaagatgatcaaaccgaaaccgtgaatgct
gagacagaaactccaacagaagttgaagcgaaagaagcagcatcggcccgtgagccacgt
gaacaacgtgaaccgcgcgagcaaagaccacctcgccaggatcgtggagatcaaggtcct
cgtggacgtcatccacagaatcgtggtggagatcgcggtgagcaccgtggggaacctcgc
cagcgttatcaggacgatcaaccaagacattcagcaccgactgaacaatcaaatagagtt
ccatctaatcctggagatagaatgcatttaagtgcactacgtgaaaaagacattgaagaa
ctaaccagaatggcggaagaggcccagattgagaacgcggccggtttaaaaaagcacgaa
cttatcttctcgctcctcactaaaaaatctaaagataatgaagagatttttggtgatggt
gttctcgaaattcttcctgatggtttcggattccttcgttctccatcttataactacctt
ccaggtgccgatgatatctacgtttctccttctcaaatccgtcgtttcggtcttcgtacc
ggtgacacaattgaaggtcagatccgtactccaaaagaaggcgagcgctacttcgcactt
ctaaaagtaaaccacattaacttccgtgatccggaagctcaccgttcaacggttctattt
gataacttaactccgctctatccgaataagaaaatccaacttgaatcaaaaccaacgaac
tattcaactcgtgtgatcgatcttttcgttccacaaggttttggtcagcgttgtttgatc
gttgctcctcctaaagccggtaaaaccatgcttatgcaggacattgctaactcaatctct
gataaccatccggaagcaaaacttatcgttcttctaattgatgaacgtccggaagaagta
acagatatgaagcgtaacgtacgcgcagaagtagtttcttcgacattcgatgaacctgct
actcgtcacgtacaggtcgctgaaatggtaatcgaaaaagcaaaacgtctggttgaagca
aaacaacacgtagtgatccttctggactcaatcactcgtcttgctcgtgcttacaacaca
gttgttccaccgtcaggtaagatcctttcgggtggtgtggattccaacgcccttcacaaa
cctaagcgtttcttcggtgccgctcgtaacatcgaaaatggtggatcacttacaattatc
gcaactgcgcttattgatactggttcaagaatggacgaagttatcttcgaggaattcaaa
ggaactggtaactcggaaatccagcttgaccgtaaacttatggagaagcgtgtattcccg
tgtctggatatcaacaaatcgtctactcgtaaggaagatctccttatggccgacaaagat
cttcagagagtgttcgtacttcgtcgggtacttaacccaatgaatactatggattctatg
gaatttatccttgagcgtatgaaagatacgaagaccaatatcgctttcttggataaaatg
aacggctaa
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